Commits · 66793bbfde09afcef9b4c98fe842637d98a72d5d · biowdl / tasks

Feb 07, 2020
- small fix · 66793bbf
  cagaser authored 5 years ago
  
  66793bbf
- Merge branch 'add_sv_tasks' of github.com:biowdl/tasks into add_sv_tasks · 89b5f8ce
  cagaser authored 5 years ago
  
  89b5f8ce
- fix some sytax styles · 094f4a7a
  cagaser authored 5 years ago
  
  094f4a7a
- Update clever.wdl · cfab4a4f
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: Jasper Boom <jboom@infernum.nl>
  cfab4a4f
- fix writings according to bioWDL guidelines · 2d90e2ef
  cagaser authored 5 years ago
  
  2d90e2ef
- change outputBam to ouputBAM under output parameter · 30a692a5
  cagaser authored 5 years ago
  
  30a692a5
- make dockerimages configurable · ceb49be2
  cagaser authored 5 years ago
  
  ceb49be2
Feb 06, 2020
- add FilterShortReadsBam · 9a3eb2b0
  cagaser authored 5 years ago
  
  9a3eb2b0
- removed output structs from manta · d66c4748
  cagaser authored 5 years ago
  
  d66c4748
Feb 05, 2020
- removed all manta output files except for diploidSV.vcf · e6d73d17
  cagaser authored 5 years ago
  
  e6d73d17
- add bamindex in manta · a21e51b2
  cagaser authored 5 years ago
  
  a21e51b2
- add reference index in Manta · 6833651c
  cagaser authored 5 years ago
  
  6833651c
- changed --bamFile back to --normalBam in Manta tasks · 8069a59d
  cagaser authored 5 years ago
  
  8069a59d
- fixed BAM naming in mateclever command section · f68f0c8c
  cagaser authored 5 years ago
  
  f68f0c8c
- remove structs from manta task · 0a9e63b8
  cagaser authored 5 years ago
  
  0a9e63b8
- modify BAM files naming · adf32288
  cagaser authored 5 years ago
  
  adf32288
- removed structs · c3d68e11
  cagaser authored 5 years ago
  
  c3d68e11
Sep 24, 2019
- increase memory of clever and delly to 15G · 3bdf90e4
  cagaser authored 5 years ago
  
  3bdf90e4
Sep 23, 2019
- increase memory clever and delly · 04846427
  cagaser authored 5 years ago
  
  04846427
Jul 19, 2019
- Merge branch 'add_sv_tasks' of https://github.com/biowdl/tasks into add_sv_tasks · 6331cd8f
  cagaser authored 5 years ago
  
  Conflicts: samtools.wdl
  6331cd8f
Jul 18, 2019
- assign filtered bam as input to mateclever · 2f1604a8
  cagaser authored 5 years ago
  
  2f1604a8
Jul 17, 2019
- Resolved merge conflicts · 415542dd
  cagaser authored 5 years ago
  
  415542dd
- modify SV files · e977af69
  cagaser authored 5 years ago
  
  e977af69
- Merge pull request #121 from biowdl/BIOWDL-279 · b7ae88d3
  Cats authored 5 years ago
  
  add allow contain
  b7ae88d3
- update changelog · 2fc05e3e
  Ruben Vorderman authored 5 years ago
  
  2fc05e3e
- Merge remote-tracking branch 'origin/develop' into BIOWDL-279 · dda8d13c
  Ruben Vorderman authored 5 years ago
  
  dda8d13c
- samtools.wdl: add include header option to samtools view · dc1f66b5
  cagaser authored 5 years ago
  
  dc1f66b5
Jul 16, 2019
- add PULL_REQUEST_TEMPLATE · 0ffa2a41
  Ruben Vorderman authored 5 years ago
  
  0ffa2a41
Jul 15, 2019
- add allow contain · 8ed04648
  Ruben Vorderman authored 5 years ago
  
  8ed04648
- Merge pull request #120 from biowdl/BIOWDL-271 · 871a562e
  Cats authored 5 years ago
  
  add task for the chunked-scatter script
  871a562e
- Merge branch 'develop' into BIOWDL-271 · 416757fa
  Ruben Vorderman authored 5 years ago
  
  416757fa
- Merge pull request #112 from biowdl/KG-295 · 02a056f5
  Ruben Vorderman authored 5 years ago
  
  Add CNV callers
  02a056f5
Jul 12, 2019
- fix output chunked-scatter · 54f0eb2e
  Cats authored 5 years ago
  
  54f0eb2e
Jul 10, 2019
- Merge branch 'develop' into BIOWDL-271 · 39b6674d
  Cats authored 5 years ago
  
  39b6674d
- set proper docker image for chunked-scatter · 9fedcc11
  Cats authored 5 years ago
  
  9fedcc11
- add memory requirement · 157bbf9b
  Ruben Vorderman authored 5 years ago
  
  157bbf9b
- use wisestork with proper biocontainers · e69e3a9d
  Ruben Vorderman authored 5 years ago
  
  e69e3a9d
- Merge remote-tracking branch 'origin/develop' into KG-295 · 9a4b3de0
  Ruben Vorderman authored 5 years ago
  
  9a4b3de0
- Merge pull request #119 from biowdl/BIOWDL-265 · c46581cb
  Ruben Vorderman authored 5 years ago
  
  Some minor changes and small fixes
  c46581cb
Jul 09, 2019
- Merge branch 'BIOWDL-265' of https://github.com/biowdl/tasks into BIOWDL-265 · a71e83f4
  Ruben Vorderman authored 5 years ago
  
  a71e83f4