Commits · 4e27d421c27dbb70df5b76ea19649b4ecf7005d9 · biowdl / tasks

Feb 06, 2020
- update changelog · 4e27d421
  Ruben Vorderman authored 5 years ago
  
  4e27d421
- Merge remote-tracking branch 'origin/develop' into BIOWDL-400 · 3613a7e4
  Ruben Vorderman authored 5 years ago
  
  3613a7e4
- add parameter_meta · 2ba6443a
  Ruben Vorderman authored 5 years ago
  
  2ba6443a
- add pedigree to GenotypeGVCF · 9fa422f4
  Ruben Vorderman authored 5 years ago
  
  9fa422f4
- add pedigree file · f377d14e
  Ruben Vorderman authored 5 years ago
  
  f377d14e
- scatterregions always outputs ordered scatters · f25df1ae
  Ruben Vorderman authored 5 years ago
  
  f25df1ae
- Merge pull request #182 from biowdl/UMI-tools · c49b71cd
  Cats authored 5 years ago
  
  add umi-tools
  Unverified
  
  c49b71cd
- update changelog · 483882f9
  Cats authored 5 years ago
  
  483882f9
- fix lint script · 8abdaf2a
  Cats authored 5 years ago
  
  8abdaf2a
- add memory paramter_meta for umitools dedup · fecdeb7c
  Cats authored 5 years ago
  
  fecdeb7c
- update scripts submodule · 651acbe3
  Cats authored 5 years ago
  
  651acbe3
Feb 04, 2020
- Merge remote-tracking branch 'origin/develop' into UMI-tools · 38f56c02
  Cats authored 5 years ago
  
  38f56c02
- increase umi dedup memory · e55983c0
  Cats authored 5 years ago
  
  e55983c0
- increase memory of umitools dedup · 7ca9cdc3
  Cats authored 5 years ago
  
  7ca9cdc3
Feb 03, 2020
- Merge pull request #184 from biowdl/BIOWDL-396 · 9d62a9d9
  Ruben Vorderman authored 5 years ago
  
  Changes for the GATK-variantcalling pipeline.
  Unverified
  
  9d62a9d9
- Merge branch 'develop' into BIOWDL-396 · c296af83
  Ruben Vorderman authored 5 years ago
  
  Unverified
  
  c296af83
- Merge pull request #183 from biowdl/BIOWDL-395 · 9d3d70bb
  Jasper Boom authored 5 years ago
  
  BIOWDL-395: Add Centrifuge specific Krona task
  Unverified
  
  9d3d70bb
- correct mistake · 1084b282
  Ruben Vorderman authored 5 years ago
  
  1084b282
- update changelog · 39694df0
  Ruben Vorderman authored 5 years ago
  
  39694df0
- update parameter_meta · 9af750f5
  Ruben Vorderman authored 5 years ago
  
  9af750f5
- Update CHANGELOG. · ac282470
  JasperBoom authored 5 years ago
  
  ac282470
- Update Krona container. · 48ac569f
  JasperBoom authored 5 years ago
  
  48ac569f
- add parameter_meta · 93859b9e
  Ruben Vorderman authored 5 years ago
  
  93859b9e
- tar the genomicsdbworkspace path · 1a51a354
  Ruben Vorderman authored 5 years ago
  
  1a51a354
- Merge remote-tracking branch 'origin' into BIOWDL-396 · 20b83d3b
  Ruben Vorderman authored 5 years ago
  
  20b83d3b
Jan 31, 2020
- fix missing directory and read2output umitools · 75903be3
  Cats authored 5 years ago
  
  75903be3
- add genomicsDBImport · be34af2f
  Ruben Vorderman authored 5 years ago
  
  be34af2f
- Add Centrifuge specific Krona task. · ca18e055
  JasperBoom authored 5 years ago
  
  ca18e055
- fix parameter meta · b853b581
  Ruben Vorderman authored 5 years ago
  
  b853b581
- better dbsnp flag · 19a1614b
  Ruben Vorderman authored 5 years ago
  
  19a1614b
- cleanup genotypeGVCFs · 387ecd36
  Ruben Vorderman authored 5 years ago
  
  387ecd36
- GenotypeGVCFs only works on a single file · 4a7474a4
  Ruben Vorderman authored 5 years ago
  
  4a7474a4
Jan 30, 2020
- add umi-tools · 55477bb7
  Cats authored 5 years ago
  
  55477bb7
- Merge pull request #181 from biowdl/BIOWDL-331 · 3edb2f05
  Jasper Boom authored 5 years ago
  
  BIOWDL-331: Fix Centrifuge tests, where sometimes the index files could still not…
  Unverified
  
  3edb2f05
- Replace moving with hardlinking. · 7ba4c125
  JasperBoom authored 5 years ago
  
  7ba4c125
- change input · 20c4c217
  Ruben Vorderman authored 5 years ago
  
  20c4c217
- Fix command section for Inspect. · 457a3437
  JasperBoom authored 5 years ago
  
  457a3437
- Fix Centrifuge tests, where sometimes the index files could still not be located. · b260dad4
  JasperBoom authored 5 years ago
  
  b260dad4
- Merge remote-tracking branch 'origin/develop' into BIOWDL-396 · 19b01ccb
  Ruben Vorderman authored 5 years ago
  
  19b01ccb
- adapt haplotypecaller · fcde2507
  Ruben Vorderman authored 5 years ago
  
  fcde2507