Commits · 35751a5fb1f1e32f9dd4be01cccd466e23d3b71f · biowdl / tasks

Mar 05, 2019
- memory adjustments · 35751a5f
  Cats authored 6 years ago
  
  35751a5f
Mar 01, 2019
- docker added for somatic variantcallers · dd97cb46
  Cats authored 6 years ago
  
  dd97cb46
Feb 26, 2019
- Merge pull request #97 from biowdl/BIOWDL-208 · 34d0d144
  Ruben Vorderman authored 6 years ago
  
  Containerize tasks for RNA-seq
  Unverified
  
  34d0d144
Feb 25, 2019
- fix multiqc · c3c483de
  Ruben Vorderman authored 6 years ago
  
  c3c483de
- remove precommand · e6e88a0f
  Ruben Vorderman authored 6 years ago
  
  e6e88a0f
- dockerize multiqc · 7a913a26
  Ruben Vorderman authored 6 years ago
  
  7a913a26
- dockerize gffcompare · f5ba74d4
  Ruben Vorderman authored 6 years ago
  
  f5ba74d4
- dockerize vcfstats · 81717966
  Ruben Vorderman authored 6 years ago
  
  81717966
- use bash container · d9835ef4
  Ruben Vorderman authored 6 years ago
  
  d9835ef4
- validatevcf to docker · c85b0974
  Ruben Vorderman authored 6 years ago
  
  c85b0974
- dockerize validate tasks · 2e357ab1
  Ruben Vorderman authored 6 years ago
  
  2e357ab1
- more explanation · 64a0c979
  Ruben Vorderman authored 6 years ago
  
  64a0c979
- Merge pull request #94 from biowdl/BIOWDL-204 · fd317ce7
  Ruben Vorderman authored 6 years ago
  
  Containerize gffread and cpat
  Unverified
  
  fd317ce7
- remove pipefail · bbb63b8a
  Ruben Vorderman authored 6 years ago
  
  bbb63b8a
- update tag · 87d20bb3
  Ruben Vorderman authored 6 years ago
  
  87d20bb3
- Merge remote-tracking branch 'origin/develop' into BIOWDL-204 · 1bd0a905
  Ruben Vorderman authored 6 years ago
  
  1bd0a905
- Merge pull request #96 from biowdl/python-slim · 59ffa323
  Ruben Vorderman authored 6 years ago
  
  Work with python slim containers to perform python script tasks.
  Unverified
  
  59ffa323
- update comment · 2dae6bd4
  Ruben Vorderman authored 6 years ago
  
  2dae6bd4
- Merge remote-tracking branch 'origin/develop' into python-slim · 7fbab1fc
  Ruben Vorderman authored 6 years ago
  
  7fbab1fc
- python containers added · 1dfced0d
  Ruben Vorderman authored 6 years ago
  
  1dfced0d
- Merge branch 'develop' into BIOWDL-204 · dc56e845
  Ruben Vorderman authored 6 years ago
  
  Unverified
  
  dc56e845
- Merge pull request #95 from biowdl/clean_up · 78ebc0c8
  Ruben Vorderman authored 6 years ago
  
  some clean up
  Unverified
  
  78ebc0c8
Feb 22, 2019
- remove parameter_meta entry for removed input · 96ec7dc1
  Cats authored 6 years ago
  
  96ec7dc1
- some clean up · 4da285de
  Cats authored 6 years ago
  
  4da285de
- use docker hub string · 0826cebe
  Ruben Vorderman authored 6 years ago
  
  0826cebe
- remove redundant precommand · 26f2a504
  Ruben Vorderman authored 6 years ago
  
  26f2a504
- remove illegal -o pipefail · 790a4eef
  Ruben Vorderman authored 6 years ago
  
  790a4eef
- add cpat container · 2cbf5883
  Ruben Vorderman authored 6 years ago
  
  2cbf5883
Feb 21, 2019
- dockerize jsontoyaml · d88e81ec
  Ruben Vorderman authored 6 years ago
  
  d88e81ec
- use the python slim container · 2cc7e614
  Ruben Vorderman authored 6 years ago
  
  2cc7e614
- dockerify gffread · c7f9302d
  Ruben Vorderman authored 6 years ago
  
  c7f9302d
- Merge pull request #92 from biowdl/BIOWDL-199 · ca35e74a
  Cats authored 6 years ago
  
  Dockerize GATK. Scattering now works with containers. Tabix another docker image.
  Unverified
  
  ca35e74a
- Merge branch 'BIOWDL-199' of https://github.com/biowdl/tasks into BIOWDL-199 · 68ff64af
  Ruben Vorderman authored 6 years ago
  
  68ff64af
- explain the why · b742bffc
  Ruben Vorderman authored 6 years ago
  
  b742bffc
- increase memory · 18eb28a7
  Ruben Vorderman authored 6 years ago
  
  18eb28a7
- excessive newline removal · 732552c4
  Ruben Vorderman authored 6 years ago
  
  732552c4
- make outdirpath available · 8d8f5339
  Ruben Vorderman authored 6 years ago
  
  8d8f5339
- memory updated · 99cb0cec
  Ruben Vorderman authored 6 years ago
  
  99cb0cec
Feb 20, 2019
- make output dirs · 5607a41d
  Ruben Vorderman authored 6 years ago
  
  5607a41d
- correctly use gatk4 · c91340d5
  Ruben Vorderman authored 6 years ago
  
  c91340d5