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Commit 732552c4 authored by Ruben Vorderman's avatar Ruben Vorderman
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excessive newline removal

parent 8d8f5339
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1 merge request!92Dockerize GATK. Scattering now works with containers. Tabix another docker image.
......@@ -251,7 +251,6 @@ task ScatterRegions {
String outputDirPath = "scatters"
}
command {
set -e -o pipefail
mkdir -p ~{outputDirPath}
......
......@@ -96,10 +96,7 @@ task CombineGVCFs {
Array[File]+ gvcfFiles
Array[File]+ gvcfFilesIndex
Array[File]+ intervals
String outputPath
Reference reference
Int memory = 4
......@@ -166,11 +163,8 @@ task GenotypeGVCFs {
Array[File]+ gvcfFiles
Array[File]+ gvcfFilesIndex
Array[File]+ intervals
String outputPath
Reference reference
IndexedVcfFile? dbsnpVCF
Int memory = 6
......@@ -217,7 +211,6 @@ task HaplotypeCallerGvcf {
String gvcfPath
Reference reference
Float contamination = 0.0
IndexedVcfFile? dbsnpVCF
Int memory = 4
......
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