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Commit c91340d5 authored by Ruben Vorderman's avatar Ruben Vorderman
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correctly use gatk4

parent 810228f4
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1 merge request!92Dockerize GATK. Scattering now works with containers. Tabix another docker image.
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......@@ -42,7 +42,7 @@ task ApplyBQSR {
}
runtime {
docker: "quay.io/biocontainers/gatk:" + dockerTag
docker: "quay.io/biocontainers/gatk4:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
......@@ -84,7 +84,7 @@ task BaseRecalibrator {
}
runtime {
docker: "quay.io/biocontainers/gatk:" + dockerTag
docker: "quay.io/biocontainers/gatk4:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
......@@ -123,7 +123,7 @@ task CombineGVCFs {
}
runtime {
docker: "quay.io/biocontainers/gatk:" + dockerTag
docker: "quay.io/biocontainers/gatk4:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
......@@ -152,7 +152,7 @@ task GatherBqsrReports {
}
runtime {
docker: "quay.io/biocontainers/gatk:" + dockerTag
docker: "quay.io/biocontainers/gatk4:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
......@@ -198,7 +198,7 @@ task GenotypeGVCFs {
}
runtime {
docker: "quay.io/biocontainers/gatk:" + dockerTag
docker: "quay.io/biocontainers/gatk4:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
......
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