Commits · 32c08100bcbf0590d7c1d69e08cdae2e3c640e99 · biowdl / tasks

May 19, 2021
- adjust runtime settings · 32c08100
  Cats authored 3 years ago
  
  32c08100
Apr 12, 2021
- memory and runtime adjustements · 0862eab3
  Cats authored 3 years ago
  
  0862eab3
Feb 24, 2021
- Update bcftools.wdl · 119e2aca
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  119e2aca
- Update bcftools.wdl · 505c4fc0
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  505c4fc0
Feb 21, 2021
- add option for bcftools view filtering · 70d7a2b3
  cagaser authored 4 years ago
  
  70d7a2b3
- add bcftools view filtering options · 5fc58ce1
  cagaser authored 4 years ago
  
  5fc58ce1
Jan 28, 2021
- fix some issues, add flagstat · 96fa1bc6
  Cats authored 4 years ago
  
  96fa1bc6
Jan 06, 2021
- comment out healthchecker task and remove duplicate input in bcftools annotate · c482e833
  Cats authored 4 years ago
  
  c482e833
Dec 16, 2020
- add purple outputs · 9896f4fc
  Cats authored 4 years ago
  
  9896f4fc
Nov 06, 2020
- Update first set of parameter_meta. · 333f052f
  JasperBoom authored 4 years ago
  
  333f052f
Oct 30, 2020
- Update first set of tasks to uniform layout. · f4fee79b
  JasperBoom authored 4 years ago
  
  f4fee79b
Oct 26, 2020
- add missing input · 070cbb25
  Cats authored 4 years ago
  
  070cbb25
- typo · 8bc34ddf
  Cats authored 4 years ago
  
  8bc34ddf
- fix missing key in parameter_met · 836f40c1
  Cats authored 4 years ago
  
  836f40c1
- add license notice to snpeff, add index input for bcftools annotate, and BWA... · 674158b8
  Cats authored 4 years ago
  
  add license notice to snpeff, add index input for bcftools annotate, and BWA mem index image input for gridss annotate inserted sequences
  674158b8
- add some missing inputs to gridss AnnotateInsertedSequence and add missing \ to bcftools Filter · 208e8f46
  Cats authored 4 years ago
  
  208e8f46
Oct 16, 2020
- add gripss, timeMinutes for gridss, fix typos · a772e377
  Cats authored 4 years ago
  
  a772e377
Oct 12, 2020
- add tmpDir to parameter_meta section · 72ad1f1b
  cagaser authored 4 years ago
  
  72ad1f1b
- add tmpDir input to specify temporary directory when sorting. · 15343889
  cagaser authored 4 years ago
  
  15343889
Oct 09, 2020
- remove outputType and indexing instead based on extension of the file · 7c065d40
  cagaser authored 4 years ago
  
  7c065d40
Oct 06, 2020
- fix bcftools filter · 09372028
  Cats authored 4 years ago
  
  09372028
Oct 05, 2020
- fix whitespace · 66399ba3
  Cats authored 4 years ago
  
  66399ba3
Oct 02, 2020
- fix bcftools filter · 38333745
  Cats authored 4 years ago
  
  38333745
Sep 10, 2020
- add paramter meta compressionLevel · a651adc5
  cagaser authored 4 years ago
  
  a651adc5
Sep 07, 2020
- made output extension depends on compression level · 5781179d
  cagaser authored 4 years ago
  
  5781179d
- make bcftools indexing optional · 7bc3c58d
  cagaser authored 4 years ago
  
  7bc3c58d
Aug 14, 2020
- add output {} · f07a59ae
  cagaser authored 4 years ago
  
  f07a59ae
- add bcftools sort · 1241b96f
  cagaser authored 4 years ago
  
  1241b96f
- add bcftools annotate · 31b21e1e
  cagaser authored 4 years ago
  
  31b21e1e
Aug 06, 2020
- add missing category for outputType in bcftools view · d1922724
  Cats authored 4 years ago
  
  Unverified
  
  d1922724
Jul 20, 2020
- Remove redundant newline. · 633c58b2
  Ruben Vorderman authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  633c58b2
- Add missing interpunction. · 9826e25a
  Ruben Vorderman authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  9826e25a
Jul 17, 2020
- fix view task · 631b5dfa
  Ruben Vorderman authored 4 years ago
  
  631b5dfa
- Overhaul view task · 86cd2038
  Ruben Vorderman authored 4 years ago
  
  86cd2038
- update docker image · 77b3d960
  Ruben Vorderman authored 4 years ago
  
  77b3d960
- update default images · 1308c181
  Ruben Vorderman authored 4 years ago
  
  1308c181
Jul 06, 2020
- use less memory on bcftools stats. · 46ea0ef3
  Ruben Vorderman authored 4 years ago
  
  46ea0ef3
Jun 08, 2020
- complete parameter_meta for bcf tools · f2c1d5ba
  Ruben Vorderman authored 4 years ago
  
  f2c1d5ba
Jun 05, 2020
- fix stats task · 2eca5b51
  Ruben Vorderman authored 4 years ago
  
  2eca5b51
May 28, 2020
- add dockerimage · 12420e38
  Ruben Vorderman authored 4 years ago
  
  12420e38