Commits · 1a45527118f22e6c255d4f8d88102f86838cc0c2 · biowdl / tasks

Oct 02, 2019
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
Oct 01, 2019
- memory Int -> String part 1 · abd99d15
  Cats authored 5 years ago
  
  abd99d15
Sep 27, 2019
- Merge pull request #149 from biowdl/genotype_memory · d1d0d7ea
  Cats authored 5 years ago
  
  increase memoryMultiplier for genotypeGVCFs
  Unverified
  
  d1d0d7ea
- update changelog · d68769d5
  Cats authored 5 years ago
  
  d68769d5
- increase memorymultiplier for genotypeGVCFs · 7d713cda
  Cats authored 5 years ago
  
  7d713cda
Sep 26, 2019
- Merge pull request #148 from biowdl/BIOWDL-326 · 190c7fb6
  Cats authored 5 years ago
  
  BIOWDL-326: Add -k option to minimap2 mapping
  Unverified
  
  190c7fb6
- Update CHANGELOG.md · 8705c2d1
  Boom authored 5 years ago
  
  8705c2d1
- Add -k option to minimap2 mapping · cb929160
  Boom authored 5 years ago
  
  Based on minimap2 recommendations, the -k tag should be set to 14 for aligning directRNA Nanopore data
  cb929160
Sep 25, 2019
- Merge pull request #147 from biowdl/bwakit · 6af3ca35
  Cats authored 5 years ago
  
  Add bwakit task
  Unverified
  
  6af3ca35
- add parameter_meta for bwakit · 71b8929e
  Cats authored 5 years ago
  
  71b8929e
- update changelog · 20581d95
  Cats authored 5 years ago
  
  20581d95
- Merge remote-tracking branch 'origin/develop' into bwakit · d000fc3c
  Cats authored 5 years ago
  
  d000fc3c
- Merge pull request #146 from biowdl/BIOWDL-308 · 690aedb5
  Cats authored 5 years ago
  
  BIOWDL-308: Add the option for --MD tag to minimap2
  Unverified
  
  690aedb5
Sep 24, 2019
- Update CHANGELOG.md · f81106b4
  JB authored 5 years ago
  
  f81106b4
- Add the option for --MD tag to minimap2 · ca019697
  JB authored 5 years ago
  
  ca019697
- Merge pull request #145 from biowdl/BIOWDL-261 · adcd0063
  Cats authored 5 years ago
  
  BIOWDL-261: Update average memory needs for main TALON process
  Unverified
  
  adcd0063
Sep 23, 2019
- Update CHANGELOG.md · 68bc5eb4
  JB authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  68bc5eb4
- Update scripts submodule and CHANGELOG version number · c7ada263
  JB authored 5 years ago
  
  c7ada263
Sep 20, 2019
- Merge branch 'develop' into BIOWDL-261 · d40fe80e
  JB authored 5 years ago
  
  Unverified
  
  d40fe80e
- setting next version · e98a95f0
  Ruben Vorderman authored 5 years ago
  
  e98a95f0
- fixed version · 3fc501f2
  Ruben Vorderman authored 5 years ago
  
  View commit 3fc501f2 2 tags
  
  3fc501f2
Sep 18, 2019
- Update scripts submodule · 7c172d31
  JB authored 5 years ago
  
  7c172d31
- Update CHANGELOG for TALON update · 00bb4b6a
  JB authored 5 years ago
  
  00bb4b6a
- Update average memory needs for main TALON process · fe8da1de
  JB authored 5 years ago
  
  fe8da1de
- Merge pull request #144 from biowdl/BIOWDL-309 · 77fd7927
  Cats authored 5 years ago
  
  Add "SampleConfigToSampleReadgroupLists" task to common.wdl
  Unverified
  
  77fd7927
Sep 17, 2019
- Add "SampleConfigToSampleReadgroupLists" task to common.wdl · 4b0fbb40
  JB authored 5 years ago
  
  4b0fbb40
Sep 16, 2019
- Fix highly overestimated memory requirement. · 4886c4f2
  Ruben Vorderman authored 5 years ago
  
  Unverified
  
  4886c4f2
Sep 13, 2019
- Merge pull request #143 from biowdl/clean_up · 69fdf193
  Ruben Vorderman authored 5 years ago
  
  Clean up
  Unverified
  
  69fdf193
- small style changes · 62a1b319
  Cats authored 5 years ago
  
  62a1b319
Sep 12, 2019
- update changelog · 990e14d2
  Cats authored 5 years ago
  
  990e14d2
- set interactive to true by default in multiqc · b963d209
  Cats authored 5 years ago
  
  b963d209
- Merge remote-tracking branch 'origin/develop' into clean_up · 29df9597
  Cats authored 5 years ago
  
  29df9597
- Merge pull request #142 from biowdl/BIOWDL-310 · 52852dfb
  Cats authored 5 years ago
  
  BIOWDL-310: Update TranscriptClean container to version 1.0.8
  Unverified
  
  52852dfb
- Update CHANGELOG for TranscriptClean version update · 3f4383e8
  JB authored 5 years ago
  
  3f4383e8
- Update TranscriptClean container to version 1.0.8 · 655c0e1d
  JB authored 5 years ago
  
  655c0e1d
Sep 11, 2019
- Merge pull request #141 from biowdl/biowdl-307 · a0bfd011
  Cats authored 5 years ago
  
  update samtools and htseq-count tasks for supporting more memory efficient counting (e.g. using name sorted bams)
  Unverified
  
  a0bfd011
- processed review of Davy. · f037c38a
  Mei authored 5 years ago
  
  f037c38a
- updated the changelog. · 36181551
  Mei authored 5 years ago
  
  36181551
- Merge remote-tracking branch 'origin/develop' into biowdl-307 · 1724ee74
  Mei authored 5 years ago
  
  1724ee74
- support name based sorting in smallRNA pipeline · 33f53d10
  Mei authored 5 years ago
  
  33f53d10