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Commit ced5696b authored by Cats's avatar Cats
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remove duplicate -Xmx and -jar

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gatk.wdl
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...@@ -216,7 +216,6 @@ task GenotypeGVCFs { ...@@ -216,7 +216,6 @@ task GenotypeGVCFs {
${preCommand} ${preCommand}
${toolCommand} \ ${toolCommand} \
-Xmx${mem}G -jar ${gatkJar} \
GenotypeGVCFs \ GenotypeGVCFs \
-R ${refFasta} \ -R ${refFasta} \
-O ${outputPath} \ -O ${outputPath} \
...@@ -267,7 +266,6 @@ task HaplotypeCallerGvcf { ...@@ -267,7 +266,6 @@ task HaplotypeCallerGvcf {
set -e -o pipefail set -e -o pipefail
${preCommand} ${preCommand}
${toolCommand} \ ${toolCommand} \
-Xmx${mem}G -jar ${gatkJar} \
HaplotypeCaller \ HaplotypeCaller \
-R ${refFasta} \ -R ${refFasta} \
-O ${gvcfPath} \ -O ${gvcfPath} \
......
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