diff --git a/gatk.wdl b/gatk.wdl index d54277b76508db817427f9f9ff3a46019948765c..d591626d012ed9d1709b0ecbc01664954b5ccc03 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -216,7 +216,6 @@ task GenotypeGVCFs { ${preCommand} ${toolCommand} \ - -Xmx${mem}G -jar ${gatkJar} \ GenotypeGVCFs \ -R ${refFasta} \ -O ${outputPath} \ @@ -267,7 +266,6 @@ task HaplotypeCallerGvcf { set -e -o pipefail ${preCommand} ${toolCommand} \ - -Xmx${mem}G -jar ${gatkJar} \ HaplotypeCaller \ -R ${refFasta} \ -O ${gvcfPath} \