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Commit cc9f145f authored by Cats's avatar Cats
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small adjustments regarding runtime

parent f6d9691c
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1 merge request!8Run time settings and additional adjustments
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star.wdl
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...@@ -13,7 +13,7 @@ task Star { ...@@ -13,7 +13,7 @@ task Star {
String? twopassMode String? twopassMode
Array[String]? outSAMattrRGline Array[String]? outSAMattrRGline
Float? memory Int? memory
#TODO needs to be extended for all possible output extensions #TODO needs to be extended for all possible output extensions
Map[String, String] samOutputNames = {"BAM SortedByCoordinate": "sortedByCoord.out.bam"} Map[String, String] samOutputNames = {"BAM SortedByCoordinate": "sortedByCoord.out.bam"}
......
stringtie.wdl
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View file @ cc9f145f
...@@ -28,6 +28,6 @@ task Stringtie { ...@@ -28,6 +28,6 @@ task Stringtie {
} }
runtime { runtime {
threads: select_first([threads]) threads: select_first([threads, 1])
} }
} }
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