diff --git a/star.wdl b/star.wdl index 8b9f435b705c89ec10c80f15c611fb6abe7a2338..46d401c178ccfcfc8c6bec5ff574b0d88ec3e96c 100644 --- a/star.wdl +++ b/star.wdl @@ -13,7 +13,7 @@ task Star { String? twopassMode Array[String]? outSAMattrRGline - Float? memory + Int? memory #TODO needs to be extended for all possible output extensions Map[String, String] samOutputNames = {"BAM SortedByCoordinate": "sortedByCoord.out.bam"} diff --git a/stringtie.wdl b/stringtie.wdl index a938b147acbae2525f28b36a7979fffd254df8eb..6031d7966ede0e19ef3e90a3edb8116767cb20cc 100644 --- a/stringtie.wdl +++ b/stringtie.wdl @@ -28,6 +28,6 @@ task Stringtie { } runtime { - threads: select_first([threads]) + threads: select_first([threads, 1]) } } \ No newline at end of file