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Commit b9ab2f02 authored by pjvan_thof's avatar pjvan_thof
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Fixed sep

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samtools.wdl
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View file @ b9ab2f02
task SamtoolsIndex { task Index {
String bamFilePath String bamFilePath
command { command {
...@@ -10,15 +10,15 @@ task SamtoolsIndex { ...@@ -10,15 +10,15 @@ task SamtoolsIndex {
} }
} }
task SamtoolsMerge { task Merge {
Array[File] bamFiles Array[File]+ bamFiles
String outputBamPath String outputBamPath
command { command {
samtools merge ${outputBamPath} ${bamFiles} samtools merge ${outputBamPath} ${sep=' ' bamFiles}
} }
output { output {
File bamFile = outputBamPath File outputBam = outputBamPath
} }
} }
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