From b9ab2f022039e19dcb8cd5214a3e9b19c623b77a Mon Sep 17 00:00:00 2001
From: pjvan_thof <pjrvanthof@gmail.com>
Date: Thu, 1 Mar 2018 15:53:33 +0100
Subject: [PATCH] Fixed sep
---
samtools.wdl | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/samtools.wdl b/samtools.wdl
index 6fee4d0..8cc6c47 100644
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -1,4 +1,4 @@
-task SamtoolsIndex {
+task Index {
String bamFilePath
command {
@@ -10,15 +10,15 @@ task SamtoolsIndex {
}
}
-task SamtoolsMerge {
- Array[File] bamFiles
+task Merge {
+ Array[File]+ bamFiles
String outputBamPath
command {
- samtools merge ${outputBamPath} ${bamFiles}
+ samtools merge ${outputBamPath} ${sep=' ' bamFiles}
}
output {
- File bamFile = outputBamPath
+ File outputBam = outputBamPath
}
}
\ No newline at end of file
--
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