diff --git a/samtools.wdl b/samtools.wdl index 6fee4d0b378258bcf441b5ba4b0554fa91d4f8f8..8cc6c47d430c15e62e466f96d282b88fc5c67b13 100644 --- a/samtools.wdl +++ b/samtools.wdl @@ -1,4 +1,4 @@ -task SamtoolsIndex { +task Index { String bamFilePath command { @@ -10,15 +10,15 @@ task SamtoolsIndex { } } -task SamtoolsMerge { - Array[File] bamFiles +task Merge { + Array[File]+ bamFiles String outputBamPath command { - samtools merge ${outputBamPath} ${bamFiles} + samtools merge ${outputBamPath} ${sep=' ' bamFiles} } output { - File bamFile = outputBamPath + File outputBam = outputBamPath } } \ No newline at end of file