From 2a151b5014c34ea28498da909806cfa70da65d47 Mon Sep 17 00:00:00 2001
From: cedrick <cagaser@outlook.com>
Date: Mon, 8 Mar 2021 10:27:12 +0100
Subject: [PATCH] add default tmpdir
---
umi-tools.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/umi-tools.wdl b/umi-tools.wdl
index db88860..5e08e14 100644
--- a/umi-tools.wdl
+++ b/umi-tools.wdl
@@ -78,7 +78,7 @@ task Dedup {
File inputBam
File inputBamIndex
String outputBamPath
- String tmpDir
+ String tmpDir = "./umiToolsDedupTmpDir"
Boolean paired = true
--
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