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Commit 14dcd561 authored by Ruben Vorderman's avatar Ruben Vorderman
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dockerImage somaticseq

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somaticseq.wdl
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...@@ -28,6 +28,7 @@ task ParallelPaired { ...@@ -28,6 +28,7 @@ task ParallelPaired {
File? strelkaIndel File? strelkaIndel
Int threads = 1 Int threads = 1
String dockerImage = "lethalfang/somaticseq:3.1.0"
} }
command { command {
...@@ -69,7 +70,7 @@ task ParallelPaired { ...@@ -69,7 +70,7 @@ task ParallelPaired {
runtime { runtime {
cpu: threads cpu: threads
docker: "lethalfang/somaticseq:3.1.0" docker: dockerImage
} }
} }
...@@ -99,6 +100,7 @@ task ParallelPairedTrain { ...@@ -99,6 +100,7 @@ task ParallelPairedTrain {
File? strelkaIndel File? strelkaIndel
Int threads = 1 Int threads = 1
String dockerImage = "lethalfang/somaticseq:3.1.0"
} }
command { command {
...@@ -139,7 +141,7 @@ task ParallelPairedTrain { ...@@ -139,7 +141,7 @@ task ParallelPairedTrain {
runtime { runtime {
cpu: threads cpu: threads
docker: "lethalfang/somaticseq:3.1.0" docker: dockerImage
} }
} }
...@@ -162,6 +164,7 @@ task ParallelSingle { ...@@ -162,6 +164,7 @@ task ParallelSingle {
File? strelkaVCF File? strelkaVCF
Int threads = 1 Int threads = 1
String dockerImage = "lethalfang/somaticseq:3.1.0"
} }
command { command {
...@@ -196,7 +199,7 @@ task ParallelSingle { ...@@ -196,7 +199,7 @@ task ParallelSingle {
runtime { runtime {
cpu: threads cpu: threads
docker: "lethalfang/somaticseq:3.1.0" docker: dockerImage
} }
} }
...@@ -219,6 +222,7 @@ task ParallelSingleTrain { ...@@ -219,6 +222,7 @@ task ParallelSingleTrain {
File? strelkaVCF File? strelkaVCF
Int threads = 1 Int threads = 1
String dockerImage = "lethalfang/somaticseq:3.1.0"
} }
command { command {
...@@ -252,6 +256,6 @@ task ParallelSingleTrain { ...@@ -252,6 +256,6 @@ task ParallelSingleTrain {
runtime { runtime {
cpu: threads cpu: threads
docker: "lethalfang/somaticseq:3.1.0" docker: dockerImage
} }
} }
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