diff --git a/somaticseq.wdl b/somaticseq.wdl index 77d068191c3299c1a7ef67c79ee220e86c8c8533..9e47183f3d2f47e9d21be83883714d9c095e4298 100644 --- a/somaticseq.wdl +++ b/somaticseq.wdl @@ -28,6 +28,7 @@ task ParallelPaired { File? strelkaIndel Int threads = 1 + String dockerImage = "lethalfang/somaticseq:3.1.0" } command { @@ -69,7 +70,7 @@ task ParallelPaired { runtime { cpu: threads - docker: "lethalfang/somaticseq:3.1.0" + docker: dockerImage } } @@ -99,6 +100,7 @@ task ParallelPairedTrain { File? strelkaIndel Int threads = 1 + String dockerImage = "lethalfang/somaticseq:3.1.0" } command { @@ -139,7 +141,7 @@ task ParallelPairedTrain { runtime { cpu: threads - docker: "lethalfang/somaticseq:3.1.0" + docker: dockerImage } } @@ -162,6 +164,7 @@ task ParallelSingle { File? strelkaVCF Int threads = 1 + String dockerImage = "lethalfang/somaticseq:3.1.0" } command { @@ -196,7 +199,7 @@ task ParallelSingle { runtime { cpu: threads - docker: "lethalfang/somaticseq:3.1.0" + docker: dockerImage } } @@ -219,6 +222,7 @@ task ParallelSingleTrain { File? strelkaVCF Int threads = 1 + String dockerImage = "lethalfang/somaticseq:3.1.0" } command { @@ -252,6 +256,6 @@ task ParallelSingleTrain { runtime { cpu: threads - docker: "lethalfang/somaticseq:3.1.0" + docker: dockerImage } }