From 14dcd561a0ca1bb3979cb7cee623587e5eefeb66 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 25 Jun 2019 12:35:16 +0200
Subject: [PATCH] dockerImage somaticseq
---
somaticseq.wdl | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/somaticseq.wdl b/somaticseq.wdl
index 77d0681..9e47183 100644
--- a/somaticseq.wdl
+++ b/somaticseq.wdl
@@ -28,6 +28,7 @@ task ParallelPaired {
File? strelkaIndel
Int threads = 1
+ String dockerImage = "lethalfang/somaticseq:3.1.0"
}
command {
@@ -69,7 +70,7 @@ task ParallelPaired {
runtime {
cpu: threads
- docker: "lethalfang/somaticseq:3.1.0"
+ docker: dockerImage
}
}
@@ -99,6 +100,7 @@ task ParallelPairedTrain {
File? strelkaIndel
Int threads = 1
+ String dockerImage = "lethalfang/somaticseq:3.1.0"
}
command {
@@ -139,7 +141,7 @@ task ParallelPairedTrain {
runtime {
cpu: threads
- docker: "lethalfang/somaticseq:3.1.0"
+ docker: dockerImage
}
}
@@ -162,6 +164,7 @@ task ParallelSingle {
File? strelkaVCF
Int threads = 1
+ String dockerImage = "lethalfang/somaticseq:3.1.0"
}
command {
@@ -196,7 +199,7 @@ task ParallelSingle {
runtime {
cpu: threads
- docker: "lethalfang/somaticseq:3.1.0"
+ docker: dockerImage
}
}
@@ -219,6 +222,7 @@ task ParallelSingleTrain {
File? strelkaVCF
Int threads = 1
+ String dockerImage = "lethalfang/somaticseq:3.1.0"
}
command {
@@ -252,6 +256,6 @@ task ParallelSingleTrain {
runtime {
cpu: threads
- docker: "lethalfang/somaticseq:3.1.0"
+ docker: dockerImage
}
}
--
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