... | ... | @@ -12,7 +12,7 @@ interactive login with : srun |
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batch submission with : sbatch
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### Directories
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The directories /home, /exports, /bam-export are all the same as Shark.
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The directories /home, /exports, /bam-export are all the same as on Shark.
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Please keep in mind that some programs create .config files inside your own home directory.
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This can cause binaries, pipelines etc. to use a wrong config file.
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... | ... | @@ -20,9 +20,9 @@ The scrips directive for slurm is #SBATCH, you will need to rewrite your submiss |
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### cgroups
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cgroups (control groups) limits, isolates and measures resource usage of a group of processes.
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SLURM works together with cgroups to limit your resources, what you get by default or have asked for iswhat you can only use.
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SLURM works together with cgroups to limit your resources, what you get by default or have asked for is what you can only use.
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Lets say you ask for 8G mem with the option --mem=8G and with 2 cores with --ntasks-per-node=2,
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when this jobs starts running cgroups will ensure that the only resources you will have available is 2 cores and 8G mem.
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when this jobs starts running cgroups will ensure that the only resources you will have available is 2 cores and 8G total memory.
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### Default limits
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* cores 1
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