Explore projects
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An automated workflow for taxonomically classifying assembled scaffolds from metagenomics data.
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An automated workflow for generating metagenomic assemblies with a focus on reconstructing plasmids.
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A pipeline to automatically screen the output by Jovian for the presence of species and sequences (genes) of interest, and quantify them.
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Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms
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A Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).
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