Commits · f2a6cc59b6b33675ef08cfdf0d9302ed7bcb2801 · Mirrors / mutalyzer

Jan 04, 2014
- Some fixes for running the unit tests · f2a6cc59
  Vermaat authored 11 years ago
  
  f2a6cc59
- Temporarily skip tests using AL449423.14 (no longer valid) · 323a8be1
  Vermaat authored 11 years ago
  
  323a8be1
Dec 23, 2013
- Fix unit tests with SQLAlchemy · 94df7c07
  Vermaat authored 11 years ago
  94df7c07
Dec 19, 2013
- Update unit tests for new style configuration · 135866c3
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  135866c3
Feb 25, 2013
- Warning on non-adjacent exons in transcript reference · bd3ce1d1
  Vermaat authored 12 years ago
  bd3ce1d1
Feb 12, 2013
- Use WNOMRNA_OTHER when appropriate (fixes #132) · c2b54871
  Vermaat authored 12 years ago
  c2b54871
Dec 11, 2012
- Update LRG parser for updated schema (incomplete) · e84bdeb8
  Vermaat authored 12 years ago
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Oct 04, 2012
- Warn on missing positioning scheme (fixes #114) · 1ec48b68
  Vermaat authored 12 years ago
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Jul 26, 2012
- Unit test for issue #108 · 7e6dd859
  Vermaat authored 12 years ago
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Jun 21, 2012
- Do not crash on inversions (introduced in r528) (fixes #99) · acfb2415
  Vermaat authored 12 years ago
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- First download reference in GI unit tests · 061f3d34
  Vermaat authored 12 years ago
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Mar 12, 2012
- Use UD slices in unit tests · 451b671d
  Vermaat authored 13 years ago
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- Better descriptions on chromosome · d07b822a
  Vermaat authored 13 years ago
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Feb 21, 2012
- Fix del with deleted sequence length as argument · 1b7c9c03
  Vermaat authored 13 years ago
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Jan 31, 2012
- Describe NOP variants with = (#88) · 0c5f32ea
  Vermaat authored 13 years ago
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- Unit tests for GI references · 6ead8b65
  Vermaat authored 13 years ago
  6ead8b65
Jan 26, 2012
- Do not crash on non-numeric locus tag end, fixes #81 · 38f90d91
  Vermaat authored 13 years ago
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Jan 25, 2012
- Fix LRG reference sequences · 5f77ecaf
  Vermaat authored 13 years ago
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Dec 14, 2011
- Do not crash on EX positioning (fixes #79) · 2809d839
  Vermaat authored 13 years ago
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Nov 24, 2011
- Add strandedness to BED tracks · 325130bb
  Vermaat authored 13 years ago
  325130bb
Nov 14, 2011
- Fix crash on variant without reference (thx Ivar) · 5fdc74c3
  Vermaat authored 13 years ago
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Nov 08, 2011
- Retrieve full sequence for contig reference files · cff8ea36
  Vermaat authored 13 years ago
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Nov 04, 2011
- Use implicit configuration object creation · ae2ae0c8
  Vermaat authored 13 years ago
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Oct 20, 2011
- Implement BED tracks for Genome Browser · 8402dae3
  Vermaat authored 13 years ago
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Aug 24, 2011
- Get only primary assembly mappings in position converter (naive fix for #58). · 11eb9eec
  Vermaat authored 13 years ago
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Aug 18, 2011
- Fix a bug in commit r324, allowing ordinary delins again. · 7bc44ba1
  Vermaat authored 13 years ago
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- Fix splicing bug, affecting variant protein descriptions. · fb2e95c4
  Vermaat authored 13 years ago
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- Preliminary implementation of issue #38 (unknown exon offsets). · abe2a056
  Vermaat authored 13 years ago
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Aug 16, 2011
- Fix: don't remove flanking splice sites on deletion of exons on a transcript · a6434a92
  Vermaat authored 13 years ago
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Apr 21, 2011
- Fixes for roll on reverse strand. · 8c350459
  Vermaat authored 14 years ago
  8c350459
Apr 11, 2011
- Fixes for whole-exon deletions. · 38e90d0b
  Vermaat authored 14 years ago
  38e90d0b
Apr 07, 2011
- Use environment variable MUTALYZER_ENV=test to use testing settings. · d2c3743f
  Vermaat authored 14 years ago
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- Completed post-install script. Related fixes. · 9289bd3f
  Vermaat authored 14 years ago
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Apr 05, 2011
- Sort of working version with setuptools. · b70090c6
  Vermaat authored 14 years ago
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Apr 04, 2011
- - Moved tests from ./mutalyzer/tests/ to ./tests/. · e2b51a1f
  Vermaat authored 14 years ago
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Mar 31, 2011
- Deletions of entire exons (even number of consecutive splice sites). · e13db7df
  Vermaat authored 14 years ago
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- Some updates to the batch job runner. It is now an executable in bin/. · 4b9d36e6
  Vermaat authored 14 years ago
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Mar 29, 2011
- Unit tests should not be executable. · a1c2b8eb
  Vermaat authored 14 years ago
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- Updated unit tests. Now using the nose Python testing framework. · 3f15b518
  Vermaat authored 14 years ago
  3f15b518
Mar 28, 2011
- Refactoring configuration and file paths. · 6150d6dd
  Vermaat authored 14 years ago
  6150d6dd