- Dec 21, 2015
- Dec 19, 2015
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Vermaat authored
Add gene feature to genbank file without version
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Vermaat authored
With this change the genbank parser no longer discards incomplete genes directly but keeps them as long as they have complete features annotated. For example, the PIK3R2 gene is annotated on NC_000019.9 (or a slice) as 4973..>22328 with two RNA entries. One of these, however, is complete so it would be a shame to discard the entire gene.
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Vermaat authored
This genbank file is incomplete and incorrect anyway, but this was not the mistake we want to test.
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- Dec 18, 2015
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Vermaat authored
Suppress warning about env variable in tests
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Vermaat authored
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Vermaat authored
Create legend only after gene model enrichment
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Vermaat authored
This fixes a bug where transcripts created from CDS by construction did not show up in the legend because the legend was created before that construction.
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- Dec 16, 2015
- Nov 24, 2015
- Nov 11, 2015
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Vermaat authored
Parse genbank file without VERSION field
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- Nov 10, 2015
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Vermaat authored
Partial fix for https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/188
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Vermaat authored
Speedup NCBI mapview file import
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Vermaat authored
Instead of querying the existing mappings for overlap and either updating or inserting depending on the result, we now delete overlapping mappings first and then only insert. This is roughly twice as fast. But of course still a horrible setup compared to some kind of UPSERT functionality which is unfortunately missing in current PostgreSQL.
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Vermaat authored
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- Nov 09, 2015
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Vermaat authored
Drop BatchJob.download_url column
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Vermaat authored
This is now created on use, by #111. Fixes #112
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Vermaat authored
Drop TranscriptProteinLink database table
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Vermaat authored
This data is now in Redis, by #94. Fixes #95
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Vermaat authored
Update requirements
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Vermaat authored
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Vermaat authored
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Vermaat authored
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Vermaat authored
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Vermaat authored
Readable name for batch notification sender
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Vermaat authored
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Vermaat authored
Release 2.0.14
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Vermaat authored
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Vermaat authored
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Vermaat authored
Made e-mail address optional in batch checker website interface.
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Vermaat authored
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Vermaat authored
This address is set with the new `BATCH_NOTIFICATION_EMAIL` config setting and defaults to the value of `EMAIL`.
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Vermaat authored
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- Nov 08, 2015
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Jeroen F.J. Laros authored
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- Nov 05, 2015