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    • Vermaat's avatar
      Discard incomplete genes in genbank reference files · 73c0862f
      Vermaat authored
      Many genbank reference files contain more than one gene, especially
      slices from an assembly. Some of these genes may be incomplete in
      the reference file (i.e., either start or end exceeds the outer
      coordinates). We cannot really do anything with these genes, so we
      discard them during parsing.
      73c0862f
    • Vermaat's avatar
      Add getGeneLocation webservice method · e06452a1
      Vermaat authored
      Given a gene symbol and optional genome build, this returns the location
      of the gene.
      
      Primary motivation for this is LOVD, where it will be used in combination
      with sliceChromsome as an alternative for sliceChromosomeByGene which only
      works on the fixed Ensembl genome build.
      e06452a1
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