Commits · 6c64e5eeb9eaa9aadfb49492dca12b64ef870b9f · Mirrors / mutalyzer

Apr 30, 2015
- Moved describe functionality to the extractor package. · 6c64e5ee
  Jeroen F.J. Laros authored 9 years ago and Vermaat committed 9 years ago
  
  6c64e5ee
- Move extractor dependency from GitLab to GitHub · 82f347c2
  Vermaat authored 9 years ago
  
  82f347c2
- Updated documentation. · 753bf600
  Jeroen F.J. Laros authored 9 years ago and Vermaat committed 9 years ago
  
  753bf600
- PEP8. · 57c55d0f
  Jeroen F.J. Laros authored 9 years ago and Vermaat committed 9 years ago
  
  57c55d0f
- Removed prototype code. · 64001702
  Jeroen F.J. Laros authored 9 years ago and Vermaat committed 9 years ago
  
  64001702
- Using composition instead of subclassing for the HGVSList class. · 61936296
  Jeroen F.J. Laros authored 9 years ago and Vermaat committed 9 years ago
  
  61936296
- Processed various comments, PEP8. · 378d6365
  Jeroen F.J. Laros authored 9 years ago and Vermaat committed 9 years ago
  
  378d6365
- Unicode fixes · ebca9a78
  Vermaat authored 10 years ago
  
  ebca9a78
- Integrated the description extractor in the website. · 216146bb
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  216146bb
- Added weights for raw sequences. · 83ee7989
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  83ee7989
- Fixed dup bug. · f253aacd
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  f253aacd
- Calculating weights now done on the fly. · 54ca7a7c
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  54ca7a7c
- Removed debug information · 141ad7f2
  jkvis authored 10 years ago and Vermaat committed 9 years ago
  
  141ad7f2
- Updated extractor_loader.py and test.py for the new describe.py · ea47d9bc
  jkvis authored 10 years ago and Vermaat committed 9 years ago
  
  ea47d9bc
- Added weights for variants. · 8ef4a68a
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  8ef4a68a
- Renamed Seq class to avoid clashes with BioPython. · 7f1b9642
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  7f1b9642
- Some more refactoring. · 2db722ff
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  2db722ff
- Separated the variant classes from the description module. · 8ff7b0b6
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  8ff7b0b6
- Removed the length and hgvs precalculation. · d723e09e
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  d723e09e
- Fixed empty allele bug. · 52724cc8
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  52724cc8
- Some more refactoring. · 61ddd6b7
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  61ddd6b7
- Refactoring of variant and allele models. · 08ecdc5c
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  08ecdc5c
- Added extractor_loader.py to load DNA sequences from RAW files and put them... · 7bc8e683
  jkvis authored 10 years ago and Vermaat committed 9 years ago
  
  Added extractor_loader.py to load DNA sequences from RAW files and put them through the Desciption Extractor
  7bc8e683
- Fixed bug in transposition description. · 36a7657d
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  36a7657d
- Revert "Small modification to accommodate for the refactored extractor library." · 293481dd
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  This reverts commit fd1f33ffbceacfa471cf5521f93ad15e9375aaf1.
  293481dd
- Small modification to accommodate for the refactored extractor library. · e86fe74f
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  e86fe74f
- Fixed erroneous unit tests. · b0d85531
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  b0d85531
- Made the HGVS description and length calculation more robust. · ea26f9d1
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  ea26f9d1
- Sphinx documentation strings. · 6e16157e
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  6e16157e
- Renamed variables and functions to pep8 style. · 6661d328
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  6661d328
- Made the inserted and deleted sequences uniform. · 49534102
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  49534102
- Checked the generated positions. · 036fc241
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  036fc241
- Generalised the insertion of sequences and ranges. · 5bf95286
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  5bf95286
- Debugging comment. · 5c06e5ef
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  5c06e5ef
- Added type for compound insertions. · 7f7fb5c4
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  7f7fb5c4
- Refactored the SeqList class. · 5dd4fdfc
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  5dd4fdfc
- Added JSON encoder. · 7de12969
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  7de12969
- Added sample_start and sample_end fields to the RawVar object. · a41cbe0e
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  a41cbe0e
- Removed the reference field from the Seq object. · ea252568
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  ea252568
- Fixed inserting raw sequence bug. · 649d7169
  Laros authored 10 years ago and Vermaat committed 9 years ago
  
  ins[T;A;T;G] should be insTATG
  649d7169