Use interval binning scheme on transcript mappings
This speeds up lookup of transcript mappings by genomic position a lot. By filtering on bin index, such a query now uses the index on the bin column, where previously this would involve a sequential table scan. http://interval-binning.readthedocs.org/
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- migrations/versions/1bf1b52f057_transcript_mappings_binning.py 71 additions, 0 deletions...tions/versions/1bf1b52f057_transcript_mappings_binning.py
- migrations/versions/3492d2ee8884_transcript_protein_links_have_nullable_.py 3 additions, 0 deletions...s/3492d2ee8884_transcript_protein_links_have_nullable_.py
- mutalyzer/db/models.py 8 additions, 0 deletionsmutalyzer/db/models.py
- mutalyzer/mapping.py 14 additions, 2 deletionsmutalyzer/mapping.py
- mutalyzer/services/rpc.py 52 additions, 7 deletionsmutalyzer/services/rpc.py
- requirements.txt 2 additions, 1 deletionrequirements.txt
- tests/test_services_json.py 10 additions, 10 deletionstests/test_services_json.py
- tests/test_services_soap.py 10 additions, 10 deletionstests/test_services_soap.py
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