From d8f97ead78ac91204efa8c641fe490d0c8659a49 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 29 Mar 2012 13:19:05 +0000
Subject: [PATCH] Add another test case by S Venkata Suresh Kumar
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@502 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
tests/test_mapping.py | 16 +++++++++++++++-
1 file changed, 15 insertions(+), 1 deletion(-)
diff --git a/tests/test_mapping.py b/tests/test_mapping.py
index 72a21f3c..71c2e458 100644
--- a/tests/test_mapping.py
+++ b/tests/test_mapping.py
@@ -66,7 +66,7 @@ class TestConverter():
Test for correct mapping information on genes where CDS start or stop
is exactly on the border of an exon.
- Bug reported February 24 by S Venkata Suresh Kumartest.
+ Bug reported February 24, 2012 by S Venkata Suresh Kumar.
"""
converter = self._converter('hg19')
coding = converter.chrom2c('NC_000001.10:g.115259837_115259837delT', 'list')
@@ -76,3 +76,17 @@ class TestConverter():
assert 'NM_001130523.1:c.*953delA' in coding
assert 'NM_001007553.2:c.*953delA' in coding
assert 'NM_001130523.2:c.*953delA' in coding
+
+ def test_S_Venkata_Suresh_Kumar_more(self):
+ """
+ Another test for correct mapping information on genes where CDS start
+ or stop is exactly on the border of an exon.
+
+ Bug reported March 21, 2012 by S Venkata Suresh Kumar.
+ """
+ converter = self._converter('hg19')
+ coding = converter.chrom2c('NC_000001.10:g.160012314_160012329del16', 'list')
+ assert 'NM_002241.4:c.-27250-7_-27242del16' not in coding
+ assert 'NM_002241.3:c.-27340-7_-27332del16' not in coding
+ assert 'NM_002241.4:c.1-7_9del16' in coding
+ assert 'NM_002241.3:c.1-7_9del16' in coding
--
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