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Added feedback and todo information, added splice site destruction detection
andfixed a bug in the GenBank parser. version 2.0 bugs.txt, beta-feedback.pdf, suggestions.txt, beta-feedback.txt: - Suggestions, bugs, todo lists, ... mutalyzer.sql: - Definitions of the mutalyzer database (to be merged with documentation). Install.txt: - Added the definition of the map table. batch.html: - Modified the help text to reflect the internal functionality. Mutalyzer.py: - Added the function __overSplice() that checks whether a splice site is destroyed. - Added a check for splice site destruction by calling aforementioned function. webservice.py: - Removed a typo (getGeneAndTranscipt() -> getGeneAndTranscript()). Mutator.py: - Reinstated the insertion of sequences on splice junctions to be added to the exon instead of the intron. - Fixed a bug in the shiftpos() function. GBparser.py: - Fixed a bug that was triggered if the input is a minimally annotated one-exon gene. git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@133 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
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- Install.txt 14 additions, 0 deletionsInstall.txt
- beta-feedback.pdf 0 additions, 0 deletionsbeta-feedback.pdf
- beta-feedback.txt 63 additions, 0 deletionsbeta-feedback.txt
- mutalyzer.sql 50 additions, 0 deletionsmutalyzer.sql
- src/Modules/GBparser.py 1 addition, 1 deletionsrc/Modules/GBparser.py
- src/Modules/Mutator.py 5 additions, 5 deletionssrc/Modules/Mutator.py
- src/Mutalyzer.py 32 additions, 0 deletionssrc/Mutalyzer.py
- src/webservice.py 2 additions, 2 deletionssrc/webservice.py
- suggestions.txt 146 additions, 0 deletionssuggestions.txt
- templates/batch.html 3 additions, 3 deletionstemplates/batch.html
- version 2.0 bugs.txt 75 additions, 0 deletionsversion 2.0 bugs.txt
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