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Commit 4e47d2c3 authored by Vermaat's avatar Vermaat
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Merge pull request #124 from mutalyzer/mapping-import 

Speedup NCBI mapview file import
parents aa6b1b71 0149af27
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mutalyzer/db/models.py
+ 19
− 26
View file @ 4e47d2c3
......@@ -422,37 +422,30 @@ class TranscriptMapping(db.Base):
source, transcript=1, cds=None,
select_transcript=False, version=None):
"""
Returns an existing :class:`TranscriptMapping` instance with the given
values for `chromosome`, `accession`, `version`, `gene`, and
`transcript` if it exists, or a new instance otherwise.
Returns an :class:`TranscriptMapping` instance with the given values.
If a row with a duplicate key already exists, it is deleted first.
.. note:: Unfortunately, SQLAlchemy does not have `ON DUPLICATE KEY
UPDATE` functionality, which would performance-wise be the best
way to update transcript mappings. This class method implements an
alternative albeit at the cost of querying the table for an
existing entry on each update.
way to update transcript mappings. Even if it had, PostgreSQL does
not. This class method implements an alternative albeit at the
cost of querying the table for an existing entry on each update.
From PostgreSQL 9.5 we do have ``INSERT ... ON CONFLICT DO UPDATE``
which we might want to use in the future.
http://stackoverflow.com/questions/17267417/how-do-i-do-an-upsert-merge-insert-on-duplicate-update-in-postgresql
"""
instance = cls.query.filter_by(
# Actually we should do a `lock transcript_mappings in exclusive mode;`
# to prevent concurrent reads to miss this entry.
cls.query.filter_by(
chromosome=chromosome, accession=accession, version=version,
gene=gene, transcript=transcript).first()
if instance is None:
instance = cls(chromosome, reference_type, accession, gene,
orientation, start, stop, exon_starts, exon_stops,
source, transcript=transcript, cds=cds,
select_transcript=select_transcript,
version=version)
else:
instance.reference_type = reference_type
instance.orientation = orientation
instance.start = start
instance.stop = stop
instance.bin = binning.assign_bin(start - 1, stop)
instance.exon_starts = exon_starts
instance.exon_stops = exon_stops
instance.source = source
instance.cds = cds
instance.select_transcript = select_transcript
return instance
gene=gene, transcript=transcript
).delete()
return cls(chromosome, reference_type, accession, gene, orientation,
start, stop, exon_starts, exon_stops, source,
transcript=transcript, cds=cds,
select_transcript=select_transcript, version=version)
@property
def coding(self):
......
tests/data/hg19.chr11.111771755-112247252.seq_gene.sorted.md 0 → 100644
+ 689
− 0
View file @ 4e47d2c3
#tax_id chromosome chr_start chr_stop chr_orient contig ctg_start ctg_stop ctg_orient feature_name feature_id feature_type group_label transcript evidence_code
9606 11 111989549 111990224 - NW_004929381.1 15668978 15669653 - RPS6P16 GeneID:100128923 GENE CHM1_1.1-Primary Assembly -
9606 11 111989549 111990224 - NW_004929381.1 15668978 15669653 - RPS6P16 GeneID:100128923 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 112106087 112106762 - NT_033899.8 15668503 15669178 - RPS6P16 GeneID:100128923 GENE GRCh37.p13-Primary Assembly -
9606 11 112106087 112106762 - NT_033899.8 15668503 15669178 - RPS6P16 GeneID:100128923 PSEUDO GRCh37.p13-Primary Assembly -
9606 11 111972421 111972914 + NW_004929381.1 15651850 15652343 + RPS12P21 GeneID:100271550 GENE CHM1_1.1-Primary Assembly -
9606 11 111972421 111972914 + NW_004929381.1 15651850 15652343 + RPS12P21 GeneID:100271550 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 112088967 112089460 + NT_033899.8 15651383 15651876 + RPS12P21 GeneID:100271550 GENE GRCh37.p13-Primary Assembly -
9606 11 112088967 112089460 + NT_033899.8 15651383 15651876 + RPS12P21 GeneID:100271550 PSEUDO GRCh37.p13-Primary Assembly -
9606 11 112215575 112216012 - NW_004929381.1 15895004 15895441 - RPL23AP62 GeneID:100271617 GENE CHM1_1.1-Primary Assembly -
9606 11 112215575 112216012 - NW_004929381.1 15895004 15895441 - RPL23AP62 GeneID:100271617 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 111934941 111936089 + NW_004929381.1 15614370 15615518 + LOC100422242 GeneID:100422242 GENE CHM1_1.1-Primary Assembly -
9606 11 111934941 111936089 + NW_004929381.1 15614370 15615518 + LOC100422242 GeneID:100422242 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 112051496 112052645 + NT_033899.8 15613912 15615061 + LOC100422242 GeneID:100422242 GENE GRCh37.p13-Primary Assembly -
9606 11 112051496 112052645 + NT_033899.8 15613912 15615061 + LOC100422242 GeneID:100422242 PSEUDO GRCh37.p13-Primary Assembly -
9606 11 112044282 112044590 + NW_004929381.1 15723711 15724019 + XR_252966.1 GeneID:100506870 UTR CHM1_1.1-Primary Assembly XR_252966.1 -
9606 11 112044282 112045860 + NW_004929381.1 15723711 15725289 + LOC100506870 GeneID:100506870 GENE CHM1_1.1-Primary Assembly -
9606 11 112044282 112045860 + NW_004929381.1 15723711 15725289 + XR_252966.1 GeneID:100506870 RNA CHM1_1.1-Primary Assembly XR_252966.1
9606 11 112044357 112044590 + NW_004929381.1 15723786 15724019 + XR_252967.1 GeneID:100506870 UTR CHM1_1.1-Primary Assembly XR_252967.1 -
9606 11 112044357 112045860 + NW_004929381.1 15723786 15725289 + XR_252967.1 GeneID:100506870 RNA CHM1_1.1-Primary Assembly XR_252967.1
9606 11 112045328 112045860 + NW_004929381.1 15724757 15725289 + XR_252967.1 GeneID:100506870 UTR CHM1_1.1-Primary Assembly XR_252967.1 -
9606 11 112045401 112045860 + NW_004929381.1 15724830 15725289 + XR_252966.1 GeneID:100506870 UTR CHM1_1.1-Primary Assembly XR_252966.1 -
9606 11 112160924 112161232 + NT_033899.8 15723340 15723648 + XR_246471.1 GeneID:100506870 UTR GRCh37.p13-Primary Assembly XR_246471.1 -
9606 11 112160924 112162502 + NT_033899.8 15723340 15724918 + LOC100506870 GeneID:100506870 GENE GRCh37.p13-Primary Assembly -
9606 11 112160924 112162502 + NT_033899.8 15723340 15724918 + XR_246471.1 GeneID:100506870 RNA GRCh37.p13-Primary Assembly XR_246471.1
9606 11 112160999 112161232 + NT_033899.8 15723415 15723648 + XR_246472.1 GeneID:100506870 UTR GRCh37.p13-Primary Assembly XR_246472.1 -
9606 11 112160999 112162502 + NT_033899.8 15723415 15724918 + XR_246472.1 GeneID:100506870 RNA GRCh37.p13-Primary Assembly XR_246472.1
9606 11 112161970 112162502 + NT_033899.8 15724386 15724918 + XR_246472.1 GeneID:100506870 UTR GRCh37.p13-Primary Assembly XR_246472.1 -
9606 11 112162043 112162502 + NT_033899.8 15724459 15724918 + XR_246471.1 GeneID:100506870 UTR GRCh37.p13-Primary Assembly XR_246471.1 -
9606 11 111783460 111783647 + NT_033899.8 15345876 15346063 + NR_037651.1 GeneID:100528019 UTR GRCh37.p13-Primary Assembly NR_037651.1 -
9606 11 111783460 111797595 + NT_033899.8 15345876 15360011 + HSPB2-C11orf52 GeneID:100528019 GENE GRCh37.p13-Primary Assembly -
9606 11 111783460 111797595 + NT_033899.8 15345876 15360011 + NR_037651.1 GeneID:100528019 RNA GRCh37.p13-Primary Assembly NR_037651.1
9606 11 111789402 111789728 + NT_033899.8 15351818 15352144 + NR_037651.1 GeneID:100528019 UTR GRCh37.p13-Primary Assembly NR_037651.1 -
9606 11 111795050 111795087 + NT_033899.8 15357466 15357503 + NR_037651.1 GeneID:100528019 UTR GRCh37.p13-Primary Assembly NR_037651.1 -
9606 11 111796377 111796438 + NT_033899.8 15358793 15358854 + NR_037651.1 GeneID:100528019 UTR GRCh37.p13-Primary Assembly NR_037651.1 -
9606 11 111796684 111797595 + NT_033899.8 15359100 15360011 + NR_037651.1 GeneID:100528019 UTR GRCh37.p13-Primary Assembly NR_037651.1 -
9606 11 112119672 112120353 + NW_004929381.1 15799101 15799782 + XR_252969.1 GeneID:101928774 UTR CHM1_1.1-Primary Assembly XR_252969.1 -
9606 11 112119672 112121087 + NW_004929381.1 15799101 15800516 + LOC101928774 GeneID:101928774 GENE CHM1_1.1-Primary Assembly -
9606 11 112119672 112121087 + NW_004929381.1 15799101 15800516 + XR_252969.1 GeneID:101928774 RNA CHM1_1.1-Primary Assembly XR_252969.1
9606 11 112120549 112121087 + NW_004929381.1 15799978 15800516 + XR_252969.1 GeneID:101928774 UTR CHM1_1.1-Primary Assembly XR_252969.1 -
9606 11 112236297 112236978 + NT_033899.8 15798713 15799394 + XR_246473.1 GeneID:101928774 UTR GRCh37.p13-Primary Assembly XR_246473.1 -
9606 11 112236297 112237712 + NT_033899.8 15798713 15800128 + LOC101928774 GeneID:101928774 GENE GRCh37.p13-Primary Assembly -
9606 11 112236297 112237712 + NT_033899.8 15798713 15800128 + XR_246473.1 GeneID:101928774 RNA GRCh37.p13-Primary Assembly XR_246473.1
9606 11 112237174 112237712 + NT_033899.8 15799590 15800128 + XR_246473.1 GeneID:101928774 UTR GRCh37.p13-Primary Assembly XR_246473.1 -
9606 11 112147217 112147340 + NW_004929381.1 15826646 15826769 + XR_252971.1 GeneID:101928823 UTR CHM1_1.1-Primary Assembly XR_252971.1 -
9606 11 112147404 112147510 + NW_004929381.1 15826833 15826939 + XR_252971.1 GeneID:101928823 UTR CHM1_1.1-Primary Assembly XR_252971.1 -
9606 11 111817924 111818081 - NW_004929381.1 15497353 15497510 - NM_001082619.1 GeneID:120379 UTR CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111817924 111828074 - NW_004929381.1 15497353 15507503 - NM_001082619.1 GeneID:120379 RNA CHM1_1.1-Primary Assembly NM_001082619.1 best RefSeq;identical;N
9606 11 111817924 111828074 - NW_004929381.1 15497353 15507503 - PIH1D2 GeneID:120379 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111818082 111818135 - NW_004929381.1 15497511 15497564 - NP_001076088.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111821721 111821793 - NW_004929381.1 15501150 15501222 - NM_138789.3 GeneID:120379 UTR CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111821721 111828074 - NW_004929381.1 15501150 15507503 - NM_138789.3 GeneID:120379 RNA CHM1_1.1-Primary Assembly NM_138789.3 best RefSeq;identical;N
9606 11 111821794 111821928 - NW_004929381.1 15501223 15501357 - NP_620144.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111824360 111824625 - NW_004929381.1 15503789 15504054 - NP_001076088.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111824360 111824625 - NW_004929381.1 15503789 15504054 - NP_620144.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111824962 111825207 - NW_004929381.1 15504391 15504636 - NP_001076088.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111824962 111825207 - NW_004929381.1 15504391 15504636 - NP_620144.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111825559 111825682 - NW_004929381.1 15504988 15505111 - NP_001076088.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111825559 111825682 - NW_004929381.1 15504988 15505111 - NP_620144.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111826901 111827077 - NW_004929381.1 15506330 15506506 - NP_001076088.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111826901 111827077 - NW_004929381.1 15506330 15506506 - NP_620144.1 GeneID:120379 CDS CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111827078 111827108 - NW_004929381.1 15506507 15506537 - NM_001082619.1 GeneID:120379 UTR CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111827078 111827108 - NW_004929381.1 15506507 15506537 - NM_138789.3 GeneID:120379 UTR CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111827883 111828074 - NW_004929381.1 15507312 15507503 - NM_001082619.1 GeneID:120379 UTR CHM1_1.1-Primary Assembly NM_001082619.1 -
9606 11 111827883 111828074 - NW_004929381.1 15507312 15507503 - NM_138789.3 GeneID:120379 UTR CHM1_1.1-Primary Assembly NM_138789.3 -
9606 11 111934734 111934891 - NT_033899.8 15497150 15497307 - NM_001082619.1 GeneID:120379 UTR GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111934734 111944895 - NT_033899.8 15497150 15507311 - NM_001082619.1 GeneID:120379 RNA GRCh37.p13-Primary Assembly NM_001082619.1 best RefSeq;identical;N
9606 11 111934734 111944895 - NT_033899.8 15497150 15507311 - PIH1D2 GeneID:120379 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111934892 111934945 - NT_033899.8 15497308 15497361 - NP_001076088.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111938522 111938594 - NT_033899.8 15500938 15501010 - NM_138789.3 GeneID:120379 UTR GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111938522 111944895 - NT_033899.8 15500938 15507311 - NM_138789.3 GeneID:120379 RNA GRCh37.p13-Primary Assembly NM_138789.3 best RefSeq;identical;N
9606 11 111938526 111938594 - NT_033899.8 15500942 15501010 - XM_005271403.1 GeneID:120379 UTR GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111938526 111944704 - NT_033899.8 15500942 15507120 - XM_005271403.1 GeneID:120379 RNA GRCh37.p13-Primary Assembly XM_005271403.1 mRNA;identical;N
9606 11 111938595 111938729 - NT_033899.8 15501011 15501145 - GeneID:120379 CDS GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111938595 111938729 - NT_033899.8 15501011 15501145 - NP_620144.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111941160 111941425 - NT_033899.8 15503576 15503841 - GeneID:120379 CDS GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111941160 111941425 - NT_033899.8 15503576 15503841 - NP_001076088.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111941160 111941425 - NT_033899.8 15503576 15503841 - NP_620144.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111941762 111942007 - NT_033899.8 15504178 15504423 - GeneID:120379 CDS GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111941762 111942007 - NT_033899.8 15504178 15504423 - NP_001076088.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111941762 111942007 - NT_033899.8 15504178 15504423 - NP_620144.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111942359 111942482 - NT_033899.8 15504775 15504898 - GeneID:120379 CDS GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111942359 111942482 - NT_033899.8 15504775 15504898 - NP_001076088.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111942359 111942482 - NT_033899.8 15504775 15504898 - NP_620144.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111943722 111943898 - NT_033899.8 15506138 15506314 - GeneID:120379 CDS GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111943722 111943898 - NT_033899.8 15506138 15506314 - NP_001076088.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111943722 111943898 - NT_033899.8 15506138 15506314 - NP_620144.1 GeneID:120379 CDS GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111943899 111943929 - NT_033899.8 15506315 15506345 - NM_001082619.1 GeneID:120379 UTR GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111943899 111943929 - NT_033899.8 15506315 15506345 - NM_138789.3 GeneID:120379 UTR GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111943899 111943929 - NT_033899.8 15506315 15506345 - XM_005271403.1 GeneID:120379 UTR GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111944654 111944704 - NT_033899.8 15507070 15507120 - XM_005271403.1 GeneID:120379 UTR GRCh37.p13-Primary Assembly XM_005271403.1 -
9606 11 111944704 111944895 - NT_033899.8 15507120 15507311 - NM_001082619.1 GeneID:120379 UTR GRCh37.p13-Primary Assembly NM_001082619.1 -
9606 11 111944704 111944895 - NT_033899.8 15507120 15507311 - NM_138789.3 GeneID:120379 UTR GRCh37.p13-Primary Assembly NM_138789.3 -
9606 11 111779350 111779487 - NT_033899.8 15341766 15341903 - NM_001885.1 GeneID:1410 UTR GRCh37.p13-Primary Assembly NM_001885.1 -
9606 11 111779350 111782473 - NT_033899.8 15341766 15344889 - CRYAB GeneID:1410 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111779350 111782473 - NT_033899.8 15341766 15344889 - NM_001885.1 GeneID:1410 RNA GRCh37.p13-Primary Assembly NM_001885.1 best RefSeq;identical;N
9606 11 111779488 111779691 - NT_033899.8 15341904 15342107 - NP_001876.1 GeneID:1410 CDS GRCh37.p13-Primary Assembly NM_001885.1 -
9606 11 111781051 111781173 - NT_033899.8 15343467 15343589 - NP_001876.1 GeneID:1410 CDS GRCh37.p13-Primary Assembly NM_001885.1 -
9606 11 111782248 111782448 - NT_033899.8 15344664 15344864 - NP_001876.1 GeneID:1410 CDS GRCh37.p13-Primary Assembly NM_001885.1 -
9606 11 111782449 111782473 - NT_033899.8 15344865 15344889 - NM_001885.1 GeneID:1410 UTR GRCh37.p13-Primary Assembly NM_001885.1 -
9606 11 111778793 111779451 + NW_004929381.1 15458222 15458880 + NM_001931.4 GeneID:1737 UTR CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111778793 111818192 + NW_004929381.1 15458222 15497621 + DLAT GeneID:1737 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111778793 111818192 + NW_004929381.1 15458222 15497621 + NM_001931.4 GeneID:1737 RNA CHM1_1.1-Primary Assembly NM_001931.4 best RefSeq;identical;N
9606 11 111779452 111779730 + NW_004929381.1 15458881 15459159 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111780177 111780278 + NW_004929381.1 15459606 15459707 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111782494 111782618 + NW_004929381.1 15461923 15462047 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111782771 111782924 + NW_004929381.1 15462200 15462353 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111787360 111787486 + NW_004929381.1 15466789 15466915 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111791173 111791360 + NW_004929381.1 15470602 15470789 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111793144 111793297 + NW_004929381.1 15472573 15472726 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111797366 111797433 + NW_004929381.1 15476795 15476862 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111799039 111799131 + NW_004929381.1 15478468 15478560 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111799763 111799870 + NW_004929381.1 15479192 15479299 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111805134 111805249 + NW_004929381.1 15484563 15484678 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111813799 111813961 + NW_004929381.1 15493228 15493390 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111814952 111815088 + NW_004929381.1 15494381 15494517 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111816320 111816449 + NW_004929381.1 15495749 15495878 + NP_001922.2 GeneID:1737 CDS CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111816450 111818192 + NW_004929381.1 15495879 15497621 + NM_001931.4 GeneID:1737 UTR CHM1_1.1-Primary Assembly NM_001931.4 -
9606 11 111895538 111896196 + NT_033899.8 15457954 15458612 + NM_001931.4 GeneID:1737 UTR GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111895538 111896237 + NT_033899.8 15457954 15458653 + XM_005271420.1 GeneID:1737 UTR GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111895538 111933941 + NT_033899.8 15457954 15496357 + XM_005271420.1 GeneID:1737 RNA GRCh37.p13-Primary Assembly XM_005271420.1 mRNA;identical;N
9606 11 111895538 111935002 + NT_033899.8 15457954 15497418 + DLAT GeneID:1737 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111895538 111935002 + NT_033899.8 15457954 15497418 + NM_001931.4 GeneID:1737 RNA GRCh37.p13-Primary Assembly NM_001931.4 best RefSeq;identical;N
9606 11 111895888 111896196 + NT_033899.8 15458304 15458612 + XM_005271421.1 GeneID:1737 UTR GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111895888 111933941 + NT_033899.8 15458304 15496357 + XM_005271421.1 GeneID:1737 RNA GRCh37.p13-Primary Assembly XM_005271421.1 mRNA;identical;N
9606 11 111896197 111896475 + NT_033899.8 15458613 15458891 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111896197 111896475 + NT_033899.8 15458613 15458891 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111896238 111896348 + NT_033899.8 15458654 15458764 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111896922 111897006 + NT_033899.8 15459338 15459422 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111896922 111897023 + NT_033899.8 15459338 15459439 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111896922 111897023 + NT_033899.8 15459338 15459439 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111899239 111899363 + NT_033899.8 15461655 15461779 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111899239 111899363 + NT_033899.8 15461655 15461779 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111899516 111899669 + NT_033899.8 15461932 15462085 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111899516 111899669 + NT_033899.8 15461932 15462085 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111904128 111904254 + NT_033899.8 15466544 15466670 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111904128 111904254 + NT_033899.8 15466544 15466670 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111904213 111904254 + NT_033899.8 15466629 15466670 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111907997 111908184 + NT_033899.8 15470413 15470600 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111907997 111908184 + NT_033899.8 15470413 15470600 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111907997 111908184 + NT_033899.8 15470413 15470600 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111909968 111910121 + NT_033899.8 15472384 15472537 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111909968 111910121 + NT_033899.8 15472384 15472537 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111909968 111910121 + NT_033899.8 15472384 15472537 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111914190 111914257 + NT_033899.8 15476606 15476673 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111914190 111914257 + NT_033899.8 15476606 15476673 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111914190 111914257 + NT_033899.8 15476606 15476673 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111915862 111915954 + NT_033899.8 15478278 15478370 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111915862 111915954 + NT_033899.8 15478278 15478370 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111915862 111915954 + NT_033899.8 15478278 15478370 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111916587 111916694 + NT_033899.8 15479003 15479110 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111916587 111916694 + NT_033899.8 15479003 15479110 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111916587 111916694 + NT_033899.8 15479003 15479110 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111921958 111922073 + NT_033899.8 15484374 15484489 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111921958 111922073 + NT_033899.8 15484374 15484489 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111921958 111922073 + NT_033899.8 15484374 15484489 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111930627 111930789 + NT_033899.8 15493043 15493205 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111930627 111930789 + NT_033899.8 15493043 15493205 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111930627 111930789 + NT_033899.8 15493043 15493205 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111931762 111931898 + NT_033899.8 15494178 15494314 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111931762 111931898 + NT_033899.8 15494178 15494314 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111931762 111931898 + NT_033899.8 15494178 15494314 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111933130 111933259 + NT_033899.8 15495546 15495675 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111933130 111933259 + NT_033899.8 15495546 15495675 + GeneID:1737 CDS GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111933130 111933259 + NT_033899.8 15495546 15495675 + NP_001922.2 GeneID:1737 CDS GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111933260 111933941 + NT_033899.8 15495676 15496357 + XM_005271420.1 GeneID:1737 UTR GRCh37.p13-Primary Assembly XM_005271420.1 -
9606 11 111933260 111933941 + NT_033899.8 15495676 15496357 + XM_005271421.1 GeneID:1737 UTR GRCh37.p13-Primary Assembly XM_005271421.1 -
9606 11 111933260 111935002 + NT_033899.8 15495676 15497418 + NM_001931.4 GeneID:1737 UTR GRCh37.p13-Primary Assembly NM_001931.4 -
9606 11 111783641 111784373 - NW_004929381.1 15463070 15463802 - PPIHP1 GeneID:246731 GENE CHM1_1.1-Primary Assembly -
9606 11 111783641 111784373 - NW_004929381.1 15463070 15463802 - PPIHP1 GeneID:246731 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 111900386 111901118 - NT_033899.8 15462802 15463534 - PPIHP1 GeneID:246731 GENE GRCh37.p13-Primary Assembly -
9606 11 111900386 111901118 - NT_033899.8 15462802 15463534 - PPIHP1 GeneID:246731 PSEUDO GRCh37.p13-Primary Assembly -
9606 11 111838702 111839196 - NW_004929381.1 15518131 15518625 - NM_012459.2 GeneID:26521 UTR CHM1_1.1-Primary Assembly NM_012459.2 -
9606 11 111838702 111839364 - NW_004929381.1 15518131 15518793 - NR_028383.1 GeneID:26521 UTR CHM1_1.1-Primary Assembly NR_028383.1 -
9606 11 111838702 111840700 - NW_004929381.1 15518131 15520129 - NM_012459.2 GeneID:26521 RNA CHM1_1.1-Primary Assembly NM_012459.2 best RefSeq;identical;N
9606 11 111838702 111840700 - NW_004929381.1 15518131 15520129 - NR_028383.1 GeneID:26521 RNA CHM1_1.1-Primary Assembly NR_028383.1
9606 11 111838702 111840700 - NW_004929381.1 15518131 15520129 - TIMM8B GeneID:26521 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111839197 111839364 - NW_004929381.1 15518626 15518793 - NP_036591.2 GeneID:26521 CDS CHM1_1.1-Primary Assembly NM_012459.2 -
9606 11 111839880 111840212 - NW_004929381.1 15519309 15519641 - NR_028383.1 GeneID:26521 UTR CHM1_1.1-Primary Assembly NR_028383.1 -
9606 11 111840542 111840670 - NW_004929381.1 15519971 15520099 - NP_036591.2 GeneID:26521 CDS CHM1_1.1-Primary Assembly NM_012459.2 -
9606 11 111840542 111840700 - NW_004929381.1 15519971 15520129 - NR_028383.1 GeneID:26521 UTR CHM1_1.1-Primary Assembly NR_028383.1 -
9606 11 111840671 111840700 - NW_004929381.1 15520100 15520129 - NM_012459.2 GeneID:26521 UTR CHM1_1.1-Primary Assembly NM_012459.2 -
9606 11 111955524 111956018 - NT_033899.8 15517940 15518434 - NM_012459.2 GeneID:26521 UTR GRCh37.p13-Primary Assembly NM_012459.2 -
9606 11 111955524 111956180 - NT_033899.8 15517940 15518602 - NR_028383.1 GeneID:26521 UTR GRCh37.p13-Primary Assembly NR_028383.1 -
9606 11 111955524 111957522 - NT_033899.8 15517940 15519938 - NM_012459.2 GeneID:26521 RNA GRCh37.p13-Primary Assembly NM_012459.2 best RefSeq;identical;N
9606 11 111955524 111957525 - NT_033899.8 15517940 15519938 - NR_028383.1 GeneID:26521 RNA GRCh37.p13-Primary Assembly NR_028383.1
9606 11 111955524 111957522 - NT_033899.8 15517940 15519938 - TIMM8B GeneID:26521 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111956019 111956186 - NT_033899.8 15518435 15518602 - NP_036591.2 GeneID:26521 CDS GRCh37.p13-Primary Assembly NM_012459.2 -
9606 11 111956700 111957034 - NT_033899.8 15519118 15519450 - NR_028383.1 GeneID:26521 UTR GRCh37.p13-Primary Assembly NR_028383.1 -
9606 11 111957364 111957492 - NT_033899.8 15519780 15519908 - NP_036591.2 GeneID:26521 CDS GRCh37.p13-Primary Assembly NM_012459.2 -
9606 11 111957364 111957525 - NT_033899.8 15519780 15519938 - NR_028383.1 GeneID:26521 UTR GRCh37.p13-Primary Assembly NR_028383.1 -
9606 11 111957493 111957522 - NT_033899.8 15519909 15519938 - NM_012459.2 GeneID:26521 UTR GRCh37.p13-Primary Assembly NM_012459.2 -
9606 11 112024864 112024899 + NW_004929381.1 15704293 15704328 + XR_252968.1 GeneID:283140 UTR CHM1_1.1-Primary Assembly XR_252968.1 -
9606 11 112024864 112116989 + NW_004929381.1 15704293 15796418 + LOC283140 GeneID:283140 GENE CHM1_1.1-Primary Assembly -
9606 11 112024864 112116989 + NW_004929381.1 15704293 15796418 + XR_252968.1 GeneID:283140 RNA CHM1_1.1-Primary Assembly XR_252968.1
9606 11 112047808 112048010 + NW_004929381.1 15727237 15727439 + XR_252968.1 GeneID:283140 UTR CHM1_1.1-Primary Assembly XR_252968.1 -
9606 11 112112181 112112225 + NW_004929381.1 15791610 15791654 + XR_252968.1 GeneID:283140 UTR CHM1_1.1-Primary Assembly XR_252968.1 -
9606 11 112114167 112116989 + NW_004929381.1 15793596 15796418 + XR_252968.1 GeneID:283140 UTR CHM1_1.1-Primary Assembly XR_252968.1 -
9606 11 111783460 111783553 + NT_033899.8 15345876 15345969 + NM_001541.3 GeneID:3316 UTR GRCh37.p13-Primary Assembly NM_001541.3 -
9606 11 111783460 111784817 + NT_033899.8 15345876 15347233 + HSPB2 GeneID:3316 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111783460 111784817 + NT_033899.8 15345876 15347233 + NM_001541.3 GeneID:3316 RNA GRCh37.p13-Primary Assembly NM_001541.3 best RefSeq;identical;N
9606 11 111783554 111783647 + NT_033899.8 15345970 15346063 + NP_001532.1 GeneID:3316 CDS GRCh37.p13-Primary Assembly NM_001541.3 -
9606 11 111784165 111784619 + NT_033899.8 15346581 15347035 + NP_001532.1 GeneID:3316 CDS GRCh37.p13-Primary Assembly NM_001541.3 -
9606 11 111784620 111784817 + NT_033899.8 15347036 15347233 + NM_001541.3 GeneID:3316 UTR GRCh37.p13-Primary Assembly NM_001541.3 -
9606 11 111962773 111963074 + NW_004929381.1 15642202 15642503 + MRPS36P4 GeneID:347702 GENE CHM1_1.1-Primary Assembly -
9606 11 111962773 111963074 + NW_004929381.1 15642202 15642503 + MRPS36P4 GeneID:347702 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 112079320 112079621 + NT_033899.8 15641736 15642037 + MRPS36P4 GeneID:347702 GENE GRCh37.p13-Primary Assembly -
9606 11 112079320 112079621 + NT_033899.8 15641736 15642037 + MRPS36P4 GeneID:347702 PSEUDO GRCh37.p13-Primary Assembly -
9606 11 112002334 112002979 - NW_004929381.1 15681763 15682408 - NM_001145024.1 GeneID:349633 UTR CHM1_1.1-Primary Assembly NM_001145024.1 -
9606 11 112002334 112014980 - NW_004929381.1 15681763 15694409 - NM_001145024.1 GeneID:349633 RNA CHM1_1.1-Primary Assembly NM_001145024.1 best RefSeq;mismatch;N
9606 11 112002334 112014980 - NW_004929381.1 15681763 15694409 - PLET1 GeneID:349633 GENE CHM1_1.1-Primary Assembly - best RefSeq;mismatch;N
9606 11 112002980 112003155 - NW_004929381.1 15682409 15682584 - NP_001138496.1 GeneID:349633 CDS CHM1_1.1-Primary Assembly NM_001145024.1 -
9606 11 112006512 112006573 - NW_004929381.1 15685941 15686002 - NP_001138496.1 GeneID:349633 CDS CHM1_1.1-Primary Assembly NM_001145024.1 -
9606 11 112009507 112009708 - NW_004929381.1 15688936 15689137 - NP_001138496.1 GeneID:349633 CDS CHM1_1.1-Primary Assembly NM_001145024.1 -
9606 11 112014526 112014709 - NW_004929381.1 15693955 15694138 - NP_001138496.1 GeneID:349633 CDS CHM1_1.1-Primary Assembly NM_001145024.1 -
9606 11 112014710 112014980 - NW_004929381.1 15694139 15694409 - NM_001145024.1 GeneID:349633 UTR CHM1_1.1-Primary Assembly NM_001145024.1 -
9606 11 112118876 112119521 - NT_033899.8 15681292 15681937 - NM_001145024.1 GeneID:349633 UTR GRCh37.p13-Primary Assembly NM_001145024.1 -
9606 11 112118876 112131583 - NT_033899.8 15681292 15693999 - NM_001145024.1 GeneID:349633 RNA GRCh37.p13-Primary Assembly NM_001145024.1 best RefSeq;identical;N
9606 11 112118876 112131583 - NT_033899.8 15681292 15693999 - PLET1 GeneID:349633 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 112119522 112119697 - NT_033899.8 15681938 15682113 - NP_001138496.1 GeneID:349633 CDS GRCh37.p13-Primary Assembly NM_001145024.1 -
9606 11 112123071 112123132 - NT_033899.8 15685487 15685548 - NP_001138496.1 GeneID:349633 CDS GRCh37.p13-Primary Assembly NM_001145024.1 -
9606 11 112126111 112126312 - NT_033899.8 15688527 15688728 - NP_001138496.1 GeneID:349633 CDS GRCh37.p13-Primary Assembly NM_001145024.1 -
9606 11 112131129 112131312 - NT_033899.8 15693545 15693728 - NP_001138496.1 GeneID:349633 CDS GRCh37.p13-Primary Assembly NM_001145024.1 -
9606 11 112131313 112131583 - NT_033899.8 15693729 15693999 - NM_001145024.1 GeneID:349633 UTR GRCh37.p13-Primary Assembly NM_001145024.1 -
9606 11 111897441 111897785 - NW_004929381.1 15576870 15577214 - NM_001243211.1 GeneID:3606 UTR CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111897441 111897785 - NW_004929381.1 15576870 15577214 - NM_001562.3 GeneID:3606 UTR CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111897441 111918303 - NW_004929381.1 15576870 15597732 - IL18 GeneID:3606 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111897441 111918303 - NW_004929381.1 15576870 15597732 - NM_001243211.1 GeneID:3606 RNA CHM1_1.1-Primary Assembly NM_001243211.1 best RefSeq;identical;N
9606 11 111897441 111918303 - NW_004929381.1 15576870 15597732 - NM_001562.3 GeneID:3606 RNA CHM1_1.1-Primary Assembly NM_001562.3 best RefSeq;identical;N
9606 11 111897786 111898007 - NW_004929381.1 15577215 15577436 - NP_001230140.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111897786 111898007 - NW_004929381.1 15577215 15577436 - NP_001553.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111902782 111902915 - NW_004929381.1 15582211 15582344 - NP_001230140.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111902782 111902915 - NW_004929381.1 15582211 15582344 - NP_001553.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111904254 111904388 - NW_004929381.1 15583683 15583817 - NP_001230140.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111904254 111904388 - NW_004929381.1 15583683 15583817 - NP_001553.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111907773 111907784 - NW_004929381.1 15587202 15587213 - NP_001553.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111909156 111909234 - NW_004929381.1 15588585 15588663 - NP_001230140.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111909156 111909234 - NW_004929381.1 15588585 15588663 - NP_001553.1 GeneID:3606 CDS CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111909235 111909242 - NW_004929381.1 15588664 15588671 - NM_001243211.1 GeneID:3606 UTR CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111909235 111909242 - NW_004929381.1 15588664 15588671 - NM_001562.3 GeneID:3606 UTR CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 111918092 111918303 - NW_004929381.1 15597521 15597732 - NM_001243211.1 GeneID:3606 UTR CHM1_1.1-Primary Assembly NM_001243211.1 -
9606 11 111918092 111918303 - NW_004929381.1 15597521 15597732 - NM_001562.3 GeneID:3606 UTR CHM1_1.1-Primary Assembly NM_001562.3 -
9606 11 112013974 112014318 - NT_033899.8 15576390 15576734 - NM_001243211.1 GeneID:3606 UTR GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112013974 112014318 - NT_033899.8 15576390 15576734 - NM_001562.3 GeneID:3606 UTR GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112013974 112034840 - NT_033899.8 15576390 15597256 - IL18 GeneID:3606 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 112013974 112034840 - NT_033899.8 15576390 15597256 - NM_001243211.1 GeneID:3606 RNA GRCh37.p13-Primary Assembly NM_001243211.1 best RefSeq;identical;N
9606 11 112013974 112034840 - NT_033899.8 15576390 15597256 - NM_001562.3 GeneID:3606 RNA GRCh37.p13-Primary Assembly NM_001562.3 best RefSeq;identical;N
9606 11 112014319 112014540 - NT_033899.8 15576735 15576956 - NP_001230140.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112014319 112014540 - NT_033899.8 15576735 15576956 - NP_001553.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112019326 112019459 - NT_033899.8 15581742 15581875 - NP_001230140.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112019326 112019459 - NT_033899.8 15581742 15581875 - NP_001553.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112020795 112020929 - NT_033899.8 15583211 15583345 - NP_001230140.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112020795 112020929 - NT_033899.8 15583211 15583345 - NP_001553.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112024315 112024326 - NT_033899.8 15586731 15586742 - NP_001553.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112025698 112025776 - NT_033899.8 15588114 15588192 - NP_001230140.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112025698 112025776 - NT_033899.8 15588114 15588192 - NP_001553.1 GeneID:3606 CDS GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112025777 112025784 - NT_033899.8 15588193 15588200 - NM_001243211.1 GeneID:3606 UTR GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112025777 112025784 - NT_033899.8 15588193 15588200 - NM_001562.3 GeneID:3606 UTR GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112034629 112034840 - NT_033899.8 15597045 15597256 - NM_001243211.1 GeneID:3606 UTR GRCh37.p13-Primary Assembly NM_001243211.1 -
9606 11 112034629 112034840 - NT_033899.8 15597045 15597256 - NM_001562.3 GeneID:3606 UTR GRCh37.p13-Primary Assembly NM_001562.3 -
9606 11 112021411 112022491 - NW_004929381.1 15700840 15701920 - ST13P10 GeneID:399950 GENE CHM1_1.1-Primary Assembly -
9606 11 112021411 112022491 - NW_004929381.1 15700840 15701920 - ST13P10 GeneID:399950 PSEUDO CHM1_1.1-Primary Assembly -
9606 11 112138019 112139094 - NT_033899.8 15700435 15701510 - ST13P10 GeneID:399950 GENE GRCh37.p13-Primary Assembly -
9606 11 112138019 112139094 - NT_033899.8 15700435 15701510 - ST13P10 GeneID:399950 PSEUDO GRCh37.p13-Primary Assembly -
9606 11 111828147 111828261 + NW_004929381.1 15507576 15507690 + NM_001082969.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111828147 111828819 + NW_004929381.1 15507576 15508248 + NM_001082970.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111828147 111828819 + NW_004929381.1 15507576 15508248 + NM_018195.3 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111828147 111828819 + NW_004929381.1 15507576 15508248 + NR_103469.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NR_103469.1 -
9606 11 111828147 111839052 + NW_004929381.1 15507576 15518481 + C11orf57 GeneID:55216 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111828147 111839052 + NW_004929381.1 15507576 15518481 + NM_001082969.1 GeneID:55216 RNA CHM1_1.1-Primary Assembly NM_001082969.1 best RefSeq;identical;N
9606 11 111828147 111839052 + NW_004929381.1 15507576 15518481 + NM_001082970.1 GeneID:55216 RNA CHM1_1.1-Primary Assembly NM_001082970.1 best RefSeq;identical;N
9606 11 111828147 111839052 + NW_004929381.1 15507576 15518481 + NM_018195.3 GeneID:55216 RNA CHM1_1.1-Primary Assembly NM_018195.3 best RefSeq;identical;N
9606 11 111828147 111839052 + NW_004929381.1 15507576 15518481 + NR_103469.1 GeneID:55216 RNA CHM1_1.1-Primary Assembly NR_103469.1
9606 11 111829470 111829477 + NW_004929381.1 15508899 15508906 + NM_001082969.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111829470 111829477 + NW_004929381.1 15508899 15508906 + NM_001082970.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111829470 111829477 + NW_004929381.1 15508899 15508906 + NM_018195.3 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111829470 111829587 + NW_004929381.1 15508899 15509016 + NR_103469.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NR_103469.1 -
9606 11 111829478 111829546 + NW_004929381.1 15508907 15508975 + NP_001076438.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111829478 111829546 + NW_004929381.1 15508907 15508975 + NP_001076439.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111829478 111829546 + NW_004929381.1 15508907 15508975 + NP_060665.3 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111832118 111832218 + NW_004929381.1 15511547 15511647 + NP_001076438.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111832118 111832218 + NW_004929381.1 15511547 15511647 + NP_001076439.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111832118 111832218 + NW_004929381.1 15511547 15511647 + NP_060665.3 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111832118 111832218 + NW_004929381.1 15511547 15511647 + NR_103469.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NR_103469.1 -
9606 11 111834312 111834461 + NW_004929381.1 15513741 15513890 + NP_001076438.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111834312 111834461 + NW_004929381.1 15513741 15513890 + NP_001076439.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111834312 111834461 + NW_004929381.1 15513741 15513890 + NP_060665.3 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111834312 111834461 + NW_004929381.1 15513741 15513890 + NR_103469.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NR_103469.1 -
9606 11 111835885 111835938 + NW_004929381.1 15515314 15515367 + NP_001076438.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111835885 111835938 + NW_004929381.1 15515314 15515367 + NP_001076439.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111835885 111835938 + NW_004929381.1 15515314 15515367 + NP_060665.3 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111835885 111835938 + NW_004929381.1 15515314 15515367 + NR_103469.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NR_103469.1 -
9606 11 111836368 111836875 + NW_004929381.1 15515797 15516304 + NP_001076438.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111836368 111836875 + NW_004929381.1 15515797 15516304 + NP_060665.3 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111836368 111839052 + NW_004929381.1 15515797 15518481 + NR_103469.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NR_103469.1 -
9606 11 111836371 111836875 + NW_004929381.1 15515800 15516304 + NP_001076439.1 GeneID:55216 CDS CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111836876 111839052 + NW_004929381.1 15516305 15518481 + NM_001082969.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_001082969.1 -
9606 11 111836876 111839052 + NW_004929381.1 15516305 15518481 + NM_001082970.1 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_001082970.1 -
9606 11 111836876 111839052 + NW_004929381.1 15516305 15518481 + NM_018195.3 GeneID:55216 UTR CHM1_1.1-Primary Assembly NM_018195.3 -
9606 11 111944968 111945082 + NT_033899.8 15507384 15507498 + NM_001082969.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111944968 111945640 + NT_033899.8 15507384 15508056 + NM_001082970.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111944968 111945640 + NT_033899.8 15507384 15508056 + NM_018195.3 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111944968 111945640 + NT_033899.8 15507384 15508056 + NR_103469.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NR_103469.1 -
9606 11 111944968 111955874 + NT_033899.8 15507384 15518290 + C11orf57 GeneID:55216 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111944968 111955874 + NT_033899.8 15507384 15518290 + NM_001082969.1 GeneID:55216 RNA GRCh37.p13-Primary Assembly NM_001082969.1 best RefSeq;identical;N
9606 11 111944968 111955874 + NT_033899.8 15507384 15518290 + NM_001082970.1 GeneID:55216 RNA GRCh37.p13-Primary Assembly NM_001082970.1 best RefSeq;identical;N
9606 11 111944968 111955874 + NT_033899.8 15507384 15518290 + NM_018195.3 GeneID:55216 RNA GRCh37.p13-Primary Assembly NM_018195.3 best RefSeq;identical;N
9606 11 111944968 111955874 + NT_033899.8 15507384 15518290 + NR_103469.1 GeneID:55216 RNA GRCh37.p13-Primary Assembly NR_103469.1
9606 11 111946291 111946298 + NT_033899.8 15508707 15508714 + NM_001082969.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111946291 111946298 + NT_033899.8 15508707 15508714 + NM_001082970.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111946291 111946298 + NT_033899.8 15508707 15508714 + NM_018195.3 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111946291 111946408 + NT_033899.8 15508707 15508824 + NR_103469.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NR_103469.1 -
9606 11 111946299 111946367 + NT_033899.8 15508715 15508783 + NP_001076438.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111946299 111946367 + NT_033899.8 15508715 15508783 + NP_001076439.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111946299 111946367 + NT_033899.8 15508715 15508783 + NP_060665.3 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111948939 111949039 + NT_033899.8 15511355 15511455 + NP_001076438.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111948939 111949039 + NT_033899.8 15511355 15511455 + NP_001076439.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111948939 111949039 + NT_033899.8 15511355 15511455 + NP_060665.3 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111948939 111949039 + NT_033899.8 15511355 15511455 + NR_103469.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NR_103469.1 -
9606 11 111951133 111951282 + NT_033899.8 15513549 15513698 + NP_001076438.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111951133 111951282 + NT_033899.8 15513549 15513698 + NP_001076439.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111951133 111951282 + NT_033899.8 15513549 15513698 + NP_060665.3 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111951133 111951282 + NT_033899.8 15513549 15513698 + NR_103469.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NR_103469.1 -
9606 11 111952706 111952759 + NT_033899.8 15515122 15515175 + NP_001076438.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111952706 111952759 + NT_033899.8 15515122 15515175 + NP_001076439.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111952706 111952759 + NT_033899.8 15515122 15515175 + NP_060665.3 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111952706 111952759 + NT_033899.8 15515122 15515175 + NR_103469.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NR_103469.1 -
9606 11 111953189 111953696 + NT_033899.8 15515605 15516112 + NP_001076438.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111953189 111953696 + NT_033899.8 15515605 15516112 + NP_060665.3 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111953189 111955874 + NT_033899.8 15515605 15518290 + NR_103469.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NR_103469.1 -
9606 11 111953192 111953696 + NT_033899.8 15515608 15516112 + NP_001076439.1 GeneID:55216 CDS GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111953697 111955874 + NT_033899.8 15516113 15518290 + NM_001082969.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_001082969.1 -
9606 11 111953697 111955874 + NT_033899.8 15516113 15518290 + NM_001082970.1 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_001082970.1 -
9606 11 111953697 111955874 + NT_033899.8 15516113 15518290 + NM_018195.3 GeneID:55216 UTR GRCh37.p13-Primary Assembly NM_018195.3 -
9606 11 111921558 111921673 + NW_004929381.1 15600987 15601102 + NM_031275.4 GeneID:56158 UTR CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 111921558 111926733 + NW_004929381.1 15600987 15606162 + NM_031275.4 GeneID:56158 RNA CHM1_1.1-Primary Assembly NM_031275.4 best RefSeq;identical;N
9606 11 111921558 111926733 + NW_004929381.1 15600987 15606162 + TEX12 GeneID:56158 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111923439 111923454 + NW_004929381.1 15602868 15602883 + NM_031275.4 GeneID:56158 UTR CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 111923455 111923517 + NW_004929381.1 15602884 15602946 + NP_112565.1 GeneID:56158 CDS CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 111924596 111924707 + NW_004929381.1 15604025 15604136 + NP_112565.1 GeneID:56158 CDS CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 111924800 111924851 + NW_004929381.1 15604229 15604280 + NP_112565.1 GeneID:56158 CDS CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 111925949 111926093 + NW_004929381.1 15605378 15605522 + NP_112565.1 GeneID:56158 CDS CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 111926094 111926733 + NW_004929381.1 15605523 15606162 + NM_031275.4 GeneID:56158 UTR CHM1_1.1-Primary Assembly NM_031275.4 -
9606 11 112004926 112005077 + NT_033899.8 15567342 15567493 + XM_005271612.1 GeneID:56158 UTR GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 112004926 112043279 + NT_033899.8 15567342 15605695 + TEX12 GeneID:56158 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 112004926 112043279 + NT_033899.8 15567342 15605695 + XM_005271612.1 GeneID:56158 RNA GRCh37.p13-Primary Assembly XM_005271612.1 mRNA;identical;N
9606 11 112037998 112038137 + NT_033899.8 15600414 15600553 + XM_005271611.1 GeneID:56158 UTR GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112037998 112043279 + NT_033899.8 15600414 15605695 + XM_005271611.1 GeneID:56158 RNA GRCh37.p13-Primary Assembly XM_005271611.1 mRNA;identical;N
9606 11 112038095 112038210 + NT_033899.8 15600511 15600626 + NM_031275.4 GeneID:56158 UTR GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112038095 112043279 + NT_033899.8 15600511 15605695 + NM_031275.4 GeneID:56158 RNA GRCh37.p13-Primary Assembly NM_031275.4 best RefSeq;identical;N
9606 11 112039968 112039991 + NT_033899.8 15602384 15602407 + XM_005271611.1 GeneID:56158 UTR GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112039968 112039991 + NT_033899.8 15602384 15602407 + XM_005271612.1 GeneID:56158 UTR GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 112039976 112039991 + NT_033899.8 15602392 15602407 + NM_031275.4 GeneID:56158 UTR GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112039992 112040054 + NT_033899.8 15602408 15602470 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112039992 112040054 + NT_033899.8 15602408 15602470 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 112039992 112040054 + NT_033899.8 15602408 15602470 + NP_112565.1 GeneID:56158 CDS GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112041142 112041253 + NT_033899.8 15603558 15603669 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112041142 112041253 + NT_033899.8 15603558 15603669 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 112041142 112041253 + NT_033899.8 15603558 15603669 + NP_112565.1 GeneID:56158 CDS GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112041346 112041397 + NT_033899.8 15603762 15603813 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112041346 112041397 + NT_033899.8 15603762 15603813 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 112041346 112041397 + NT_033899.8 15603762 15603813 + NP_112565.1 GeneID:56158 CDS GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112042495 112042639 + NT_033899.8 15604911 15605055 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112042495 112042639 + NT_033899.8 15604911 15605055 + GeneID:56158 CDS GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 112042495 112042639 + NT_033899.8 15604911 15605055 + NP_112565.1 GeneID:56158 CDS GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112042640 112043279 + NT_033899.8 15605056 15605695 + NM_031275.4 GeneID:56158 UTR GRCh37.p13-Primary Assembly NM_031275.4 -
9606 11 112042640 112043279 + NT_033899.8 15605056 15605695 + XM_005271611.1 GeneID:56158 UTR GRCh37.p13-Primary Assembly XM_005271611.1 -
9606 11 112042640 112043279 + NT_033899.8 15605056 15605695 + XM_005271612.1 GeneID:56158 UTR GRCh37.p13-Primary Assembly XM_005271612.1 -
9606 11 111980551 111980629 + NW_004929381.1 15659980 15660058 + NM_000317.2 GeneID:5805 UTR CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111980551 111988158 + NW_004929381.1 15659980 15667587 + NM_000317.2 GeneID:5805 RNA CHM1_1.1-Primary Assembly NM_000317.2 best RefSeq;identical;N
9606 11 111980551 111988158 + NW_004929381.1 15659980 15667587 + PTS GeneID:5805 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111980630 111980712 + NW_004929381.1 15660059 15660141 + NP_000308.1 GeneID:5805 CDS CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111982779 111982858 + NW_004929381.1 15662208 15662287 + NP_000308.1 GeneID:5805 CDS CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111984393 111984415 + NW_004929381.1 15663822 15663844 + NP_000308.1 GeneID:5805 CDS CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111984811 111984867 + NW_004929381.1 15664240 15664296 + NP_000308.1 GeneID:5805 CDS CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111987348 111987418 + NW_004929381.1 15666777 15666847 + NP_000308.1 GeneID:5805 CDS CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111987617 111987740 + NW_004929381.1 15667046 15667169 + NP_000308.1 GeneID:5805 CDS CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 111987741 111988158 + NW_004929381.1 15667170 15667587 + NM_000317.2 GeneID:5805 UTR CHM1_1.1-Primary Assembly NM_000317.2 -
9606 11 112097088 112097166 + NT_033899.8 15659504 15659582 + NM_000317.2 GeneID:5805 UTR GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112097088 112104696 + NT_033899.8 15659504 15667112 + NM_000317.2 GeneID:5805 RNA GRCh37.p13-Primary Assembly NM_000317.2 best RefSeq;identical;N
9606 11 112097088 112104696 + NT_033899.8 15659504 15667112 + PTS GeneID:5805 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 112097167 112097249 + NT_033899.8 15659583 15659665 + NP_000308.1 GeneID:5805 CDS GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112099317 112099396 + NT_033899.8 15661733 15661812 + NP_000308.1 GeneID:5805 CDS GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112100931 112100953 + NT_033899.8 15663347 15663369 + NP_000308.1 GeneID:5805 CDS GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112101349 112101405 + NT_033899.8 15663765 15663821 + NP_000308.1 GeneID:5805 CDS GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112103886 112103956 + NT_033899.8 15666302 15666372 + NP_000308.1 GeneID:5805 CDS GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112104155 112104278 + NT_033899.8 15666571 15666694 + NP_000308.1 GeneID:5805 CDS GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 112104279 112104696 + NT_033899.8 15666695 15667112 + NM_000317.2 GeneID:5805 UTR GRCh37.p13-Primary Assembly NM_000317.2 -
9606 11 111840726 111840809 + NW_004929381.1 15520155 15520238 + NM_001276503.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276503.1 -
9606 11 111840726 111840809 + NW_004929381.1 15520155 15520238 + NM_001276504.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276504.1 -
9606 11 111840726 111840809 + NW_004929381.1 15520155 15520238 + NM_001276506.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111840726 111840809 + NW_004929381.1 15520155 15520238 + NM_003002.3 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_003002.3 -
9606 11 111840726 111840861 + NW_004929381.1 15520155 15520290 + NR_077060.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NR_077060.1 -
9606 11 111840726 111849704 + NW_004929381.1 15520155 15529133 + NM_001276503.1 GeneID:6392 RNA CHM1_1.1-Primary Assembly NM_001276503.1 best RefSeq;identical;N
9606 11 111840726 111849704 + NW_004929381.1 15520155 15529133 + NM_001276504.1 GeneID:6392 RNA CHM1_1.1-Primary Assembly NM_001276504.1 best RefSeq;identical;N
9606 11 111840726 111849704 + NW_004929381.1 15520155 15529133 + NM_001276506.1 GeneID:6392 RNA CHM1_1.1-Primary Assembly NM_001276506.1 best RefSeq;mismatch;N
9606 11 111840726 111849704 + NW_004929381.1 15520155 15529133 + NM_003002.3 GeneID:6392 RNA CHM1_1.1-Primary Assembly NM_003002.3 best RefSeq;identical;N
9606 11 111840726 111849704 + NW_004929381.1 15520155 15529133 + NR_077060.1 GeneID:6392 RNA CHM1_1.1-Primary Assembly NR_077060.1
9606 11 111840726 111849704 + NW_004929381.1 15520155 15529133 + SDHD GeneID:6392 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111840810 111840861 + NW_004929381.1 15520239 15520290 + NP_001263432.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276503.1 -
9606 11 111840810 111840861 + NW_004929381.1 15520239 15520290 + NP_001263433.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276504.1 -
9606 11 111840810 111840861 + NW_004929381.1 15520239 15520290 + NP_001263435.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111840810 111840861 + NW_004929381.1 15520239 15520290 + NP_002993.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_003002.3 -
9606 11 111841759 111841875 + NW_004929381.1 15521188 15521304 + NP_001263432.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276503.1 -
9606 11 111841759 111841875 + NW_004929381.1 15521188 15521304 + NP_001263435.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111841759 111841875 + NW_004929381.1 15521188 15521304 + NP_002993.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_003002.3 -
9606 11 111841759 111841875 + NW_004929381.1 15521188 15521304 + NR_077060.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NR_077060.1 -
9606 11 111842769 111842913 + NW_004929381.1 15522198 15522342 + NP_001263433.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276504.1 -
9606 11 111842769 111842913 + NW_004929381.1 15522198 15522342 + NP_001263435.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111842769 111842913 + NW_004929381.1 15522198 15522342 + NP_002993.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_003002.3 -
9606 11 111842769 111842913 + NW_004929381.1 15522198 15522342 + NR_077060.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NR_077060.1 -
9606 11 111844982 111845035 + NW_004929381.1 15524411 15524464 + NR_077060.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NR_077060.1 -
9606 11 111846983 111847100 + NW_004929381.1 15526412 15526529 + NP_001263435.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111847101 111847112 + NW_004929381.1 15526530 15526541 + NM_001276506.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111848708 111848796 + NW_004929381.1 15528137 15528225 + NP_001263432.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276503.1 -
9606 11 111848708 111848873 + NW_004929381.1 15528137 15528302 + NP_001263433.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_001276504.1 -
9606 11 111848708 111848873 + NW_004929381.1 15528137 15528302 + NP_002993.1 GeneID:6392 CDS CHM1_1.1-Primary Assembly NM_003002.3 -
9606 11 111848708 111849704 + NW_004929381.1 15528137 15529133 + NM_001276506.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276506.1 -
9606 11 111848708 111849704 + NW_004929381.1 15528137 15529133 + NR_077060.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NR_077060.1 -
9606 11 111848797 111849704 + NW_004929381.1 15528226 15529133 + NM_001276503.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276503.1 -
9606 11 111848874 111849704 + NW_004929381.1 15528303 15529133 + NM_001276504.1 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_001276504.1 -
9606 11 111848874 111849704 + NW_004929381.1 15528303 15529133 + NM_003002.3 GeneID:6392 UTR CHM1_1.1-Primary Assembly NM_003002.3 -
9606 11 111957548 111957631 + NT_033899.8 15519964 15520047 + NM_001276503.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276503.1 -
9606 11 111957548 111957631 + NT_033899.8 15519964 15520047 + NM_001276504.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276504.1 -
9606 11 111957548 111957631 + NT_033899.8 15519964 15520047 + NM_001276506.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111957548 111957631 + NT_033899.8 15519964 15520047 + NM_003002.3 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_003002.3 -
9606 11 111957548 111957683 + NT_033899.8 15519964 15520099 + NR_077060.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NR_077060.1 -
9606 11 111957548 111966525 + NT_033899.8 15519964 15528941 + NM_001276503.1 GeneID:6392 RNA GRCh37.p13-Primary Assembly NM_001276503.1 best RefSeq;identical;N
9606 11 111957548 111966525 + NT_033899.8 15519964 15528941 + NM_001276504.1 GeneID:6392 RNA GRCh37.p13-Primary Assembly NM_001276504.1 best RefSeq;identical;N
9606 11 111957548 111966525 + NT_033899.8 15519964 15528941 + NM_001276506.1 GeneID:6392 RNA GRCh37.p13-Primary Assembly NM_001276506.1 best RefSeq;identical;N
9606 11 111957548 111966525 + NT_033899.8 15519964 15528941 + NM_003002.3 GeneID:6392 RNA GRCh37.p13-Primary Assembly NM_003002.3 best RefSeq;identical;N
9606 11 111957548 111966525 + NT_033899.8 15519964 15528941 + NR_077060.1 GeneID:6392 RNA GRCh37.p13-Primary Assembly NR_077060.1
9606 11 111957548 111966525 + NT_033899.8 15519964 15528941 + SDHD GeneID:6392 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111957553 111957631 + NT_033899.8 15519969 15520047 + XM_005271644.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly XM_005271644.1 -
9606 11 111957553 111963933 + NT_033899.8 15519969 15526349 + XM_005271644.1 GeneID:6392 RNA GRCh37.p13-Primary Assembly XM_005271644.1 mRNA;identical;N
9606 11 111957632 111957683 + NT_033899.8 15520048 15520099 + GeneID:6392 CDS GRCh37.p13-Primary Assembly XM_005271644.1 -
9606 11 111957632 111957683 + NT_033899.8 15520048 15520099 + NP_001263432.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276503.1 -
9606 11 111957632 111957683 + NT_033899.8 15520048 15520099 + NP_001263433.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276504.1 -
9606 11 111957632 111957683 + NT_033899.8 15520048 15520099 + NP_001263435.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111957632 111957683 + NT_033899.8 15520048 15520099 + NP_002993.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_003002.3 -
9606 11 111958581 111958697 + NT_033899.8 15520997 15521113 + GeneID:6392 CDS GRCh37.p13-Primary Assembly XM_005271644.1 -
9606 11 111958581 111958697 + NT_033899.8 15520997 15521113 + NP_001263432.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276503.1 -
9606 11 111958581 111958697 + NT_033899.8 15520997 15521113 + NP_001263435.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111958581 111958697 + NT_033899.8 15520997 15521113 + NP_002993.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_003002.3 -
9606 11 111958581 111958697 + NT_033899.8 15520997 15521113 + NR_077060.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NR_077060.1 -
9606 11 111959591 111959735 + NT_033899.8 15522007 15522151 + GeneID:6392 CDS GRCh37.p13-Primary Assembly XM_005271644.1 -
9606 11 111959591 111959735 + NT_033899.8 15522007 15522151 + NP_001263433.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276504.1 -
9606 11 111959591 111959735 + NT_033899.8 15522007 15522151 + NP_001263435.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111959591 111959735 + NT_033899.8 15522007 15522151 + NP_002993.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_003002.3 -
9606 11 111959591 111959735 + NT_033899.8 15522007 15522151 + NR_077060.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NR_077060.1 -
9606 11 111961803 111961856 + NT_033899.8 15524219 15524272 + NR_077060.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NR_077060.1 -
9606 11 111963804 111963921 + NT_033899.8 15526220 15526337 + GeneID:6392 CDS GRCh37.p13-Primary Assembly XM_005271644.1 -
9606 11 111963804 111963921 + NT_033899.8 15526220 15526337 + NP_001263435.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111963922 111963933 + NT_033899.8 15526338 15526349 + NM_001276506.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111963922 111963933 + NT_033899.8 15526338 15526349 + XM_005271644.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly XM_005271644.1 -
9606 11 111965529 111965617 + NT_033899.8 15527945 15528033 + NP_001263432.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276503.1 -
9606 11 111965529 111965694 + NT_033899.8 15527945 15528110 + NP_001263433.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_001276504.1 -
9606 11 111965529 111965694 + NT_033899.8 15527945 15528110 + NP_002993.1 GeneID:6392 CDS GRCh37.p13-Primary Assembly NM_003002.3 -
9606 11 111965529 111966525 + NT_033899.8 15527945 15528941 + NM_001276506.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276506.1 -
9606 11 111965529 111966525 + NT_033899.8 15527945 15528941 + NR_077060.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NR_077060.1 -
9606 11 111965618 111966525 + NT_033899.8 15528034 15528941 + NM_001276503.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276503.1 -
9606 11 111965695 111966525 + NT_033899.8 15528111 15528941 + NM_001276504.1 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_001276504.1 -
9606 11 111965695 111966525 + NT_033899.8 15528111 15528941 + NM_003002.3 GeneID:6392 UTR GRCh37.p13-Primary Assembly NM_003002.3 -
9606 11 111929662 111929778 + NW_004929381.1 15609091 15609207 + NM_001256398.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111929662 111929778 + NW_004929381.1 15609091 15609207 + NM_031938.5 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111929662 111973106 + NW_004929381.1 15609091 15652535 + BCO2 GeneID:83875 GENE CHM1_1.1-Primary Assembly - best RefSeq;identical;N
9606 11 111929662 111973106 + NW_004929381.1 15609091 15652535 + NM_001256398.1 GeneID:83875 RNA CHM1_1.1-Primary Assembly NM_001256398.1 best RefSeq;identical;N
9606 11 111929662 111973106 + NW_004929381.1 15609091 15652535 + NM_031938.5 GeneID:83875 RNA CHM1_1.1-Primary Assembly NM_031938.5 best RefSeq;identical;N
9606 11 111929779 111929866 + NW_004929381.1 15609208 15609295 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111929779 111929866 + NW_004929381.1 15609208 15609295 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111930543 111930635 + NW_004929381.1 15609972 15610064 + NM_001037290.2 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111930543 111930635 + NW_004929381.1 15609972 15610064 + NM_001256397.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111930543 111930635 + NW_004929381.1 15609972 15610064 + NM_001256400.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111930543 111973106 + NW_004929381.1 15609972 15652535 + NM_001037290.2 GeneID:83875 RNA CHM1_1.1-Primary Assembly NM_001037290.2 best RefSeq;identical;N
9606 11 111930543 111973106 + NW_004929381.1 15609972 15652535 + NM_001256397.1 GeneID:83875 RNA CHM1_1.1-Primary Assembly NM_001256397.1 best RefSeq;identical;N
9606 11 111930543 111973106 + NW_004929381.1 15609972 15652535 + NM_001256400.1 GeneID:83875 RNA CHM1_1.1-Primary Assembly NM_001256400.1 best RefSeq;identical;N
9606 11 111933446 111933459 + NW_004929381.1 15612875 15612888 + NM_001037290.2 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111933446 111933459 + NW_004929381.1 15612875 15612888 + NM_001256397.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111933446 111933650 + NW_004929381.1 15612875 15613079 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111933446 111933650 + NW_004929381.1 15612875 15613079 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111933460 111933650 + NW_004929381.1 15612889 15613079 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111933460 111933650 + NW_004929381.1 15612889 15613079 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111947651 111947672 + NW_004929381.1 15627080 15627101 + NM_001256400.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111947651 111947874 + NW_004929381.1 15627080 15627303 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111947651 111947874 + NW_004929381.1 15627080 15627303 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111947651 111947874 + NW_004929381.1 15627080 15627303 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111947651 111947874 + NW_004929381.1 15627080 15627303 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111947673 111947874 + NW_004929381.1 15627102 15627303 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111948056 111948171 + NW_004929381.1 15627485 15627600 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111948056 111948171 + NW_004929381.1 15627485 15627600 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111948056 111948171 + NW_004929381.1 15627485 15627600 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111948056 111948171 + NW_004929381.1 15627485 15627600 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111948830 111948932 + NW_004929381.1 15628259 15628361 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111948830 111948932 + NW_004929381.1 15628259 15628361 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111948830 111948932 + NW_004929381.1 15628259 15628361 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111948830 111948932 + NW_004929381.1 15628259 15628361 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111953873 111954001 + NW_004929381.1 15633302 15633430 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111953873 111954001 + NW_004929381.1 15633302 15633430 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111953873 111954001 + NW_004929381.1 15633302 15633430 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111953873 111954001 + NW_004929381.1 15633302 15633430 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111953873 111954001 + NW_004929381.1 15633302 15633430 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111954787 111954947 + NW_004929381.1 15634216 15634376 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111954787 111954947 + NW_004929381.1 15634216 15634376 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111954787 111954947 + NW_004929381.1 15634216 15634376 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111954787 111954947 + NW_004929381.1 15634216 15634376 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111954787 111954947 + NW_004929381.1 15634216 15634376 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111956197 111956364 + NW_004929381.1 15635626 15635793 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111956197 111956364 + NW_004929381.1 15635626 15635793 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111956197 111956364 + NW_004929381.1 15635626 15635793 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111956197 111956364 + NW_004929381.1 15635626 15635793 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111956197 111956364 + NW_004929381.1 15635626 15635793 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111967900 111968037 + NW_004929381.1 15647329 15647466 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111967900 111968037 + NW_004929381.1 15647329 15647466 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111967900 111968037 + NW_004929381.1 15647329 15647466 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111967900 111968037 + NW_004929381.1 15647329 15647466 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111967900 111968037 + NW_004929381.1 15647329 15647466 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111968938 111969102 + NW_004929381.1 15648367 15648531 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111968938 111969120 + NW_004929381.1 15648367 15648549 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111968938 111969120 + NW_004929381.1 15648367 15648549 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111968938 111969120 + NW_004929381.1 15648367 15648549 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111968938 111969120 + NW_004929381.1 15648367 15648549 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111970397 111970507 + NW_004929381.1 15649826 15649936 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111970397 111970507 + NW_004929381.1 15649826 15649936 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111970397 111970507 + NW_004929381.1 15649826 15649936 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111970397 111970507 + NW_004929381.1 15649826 15649936 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111970397 111970507 + NW_004929381.1 15649826 15649936 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111971938 111972051 + NW_004929381.1 15651367 15651480 + NP_001032367.2 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111971938 111972051 + NW_004929381.1 15651367 15651480 + NP_001243326.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111971938 111972051 + NW_004929381.1 15651367 15651480 + NP_001243327.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111971938 111972051 + NW_004929381.1 15651367 15651480 + NP_001243329.1 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111971938 111972051 + NW_004929381.1 15651367 15651480 + NP_114144.4 GeneID:83875 CDS CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 111972052 111973106 + NW_004929381.1 15651481 15652535 + NM_001037290.2 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001037290.2 -
9606 11 111972052 111973106 + NW_004929381.1 15651481 15652535 + NM_001256397.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256397.1 -
9606 11 111972052 111973106 + NW_004929381.1 15651481 15652535 + NM_001256398.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256398.1 -
9606 11 111972052 111973106 + NW_004929381.1 15651481 15652535 + NM_001256400.1 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_001256400.1 -
9606 11 111972052 111973106 + NW_004929381.1 15651481 15652535 + NM_031938.5 GeneID:83875 UTR CHM1_1.1-Primary Assembly NM_031938.5 -
9606 11 112046208 112046324 + NT_033899.8 15608624 15608740 + NM_001256398.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112046208 112046324 + NT_033899.8 15608624 15608740 + NM_031938.5 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112046208 112089652 + NT_033899.8 15608624 15652068 + BCO2 GeneID:83875 GENE GRCh37.p13-Primary Assembly - best RefSeq;mismatch;N
9606 11 112046208 112089652 + NT_033899.8 15608624 15652068 + NM_001256398.1 GeneID:83875 RNA GRCh37.p13-Primary Assembly NM_001256398.1 best RefSeq;mismatch;N
9606 11 112046208 112089652 + NT_033899.8 15608624 15652068 + NM_031938.5 GeneID:83875 RNA GRCh37.p13-Primary Assembly NM_031938.5 best RefSeq;mismatch;N
9606 11 112046255 112046324 + NT_033899.8 15608671 15608740 + XM_005271692.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112046255 112089652 + NT_033899.8 15608671 15652068 + XM_005271692.1 GeneID:83875 RNA GRCh37.p13-Primary Assembly XM_005271692.1 mRNA;identical;N
9606 11 112046325 112046412 + NT_033899.8 15608741 15608828 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112046325 112046412 + NT_033899.8 15608741 15608828 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112046325 112046412 + NT_033899.8 15608741 15608828 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112047089 112047181 + NT_033899.8 15609505 15609597 + NM_001037290.2 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112047089 112047181 + NT_033899.8 15609505 15609597 + NM_001256397.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112047089 112047181 + NT_033899.8 15609505 15609597 + NM_001256400.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112047089 112089652 + NT_033899.8 15609505 15652068 + NM_001037290.2 GeneID:83875 RNA GRCh37.p13-Primary Assembly NM_001037290.2 best RefSeq;mismatch;N
9606 11 112047089 112089652 + NT_033899.8 15609505 15652068 + NM_001256397.1 GeneID:83875 RNA GRCh37.p13-Primary Assembly NM_001256397.1 best RefSeq;mismatch;N
9606 11 112047089 112089652 + NT_033899.8 15609505 15652068 + NM_001256400.1 GeneID:83875 RNA GRCh37.p13-Primary Assembly NM_001256400.1 best RefSeq;mismatch;N
9606 11 112050001 112050014 + NT_033899.8 15612417 15612430 + NM_001037290.2 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112050001 112050014 + NT_033899.8 15612417 15612430 + NM_001256397.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112050001 112050205 + NT_033899.8 15612417 15612621 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112050001 112050205 + NT_033899.8 15612417 15612621 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112050001 112050205 + NT_033899.8 15612417 15612621 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112050015 112050205 + NT_033899.8 15612431 15612621 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112050015 112050205 + NT_033899.8 15612431 15612621 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112064197 112064218 + NT_033899.8 15626613 15626634 + NM_001256400.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112064197 112064420 + NT_033899.8 15626613 15626836 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112064197 112064420 + NT_033899.8 15626613 15626836 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112064197 112064420 + NT_033899.8 15626613 15626836 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112064197 112064420 + NT_033899.8 15626613 15626836 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112064197 112064420 + NT_033899.8 15626613 15626836 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112064219 112064420 + NT_033899.8 15626635 15626836 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112064602 112064717 + NT_033899.8 15627018 15627133 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112064602 112064717 + NT_033899.8 15627018 15627133 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112064602 112064717 + NT_033899.8 15627018 15627133 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112064602 112064717 + NT_033899.8 15627018 15627133 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112064602 112064717 + NT_033899.8 15627018 15627133 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112065376 112065478 + NT_033899.8 15627792 15627894 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112065376 112065478 + NT_033899.8 15627792 15627894 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112065376 112065478 + NT_033899.8 15627792 15627894 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112065376 112065478 + NT_033899.8 15627792 15627894 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112065376 112065478 + NT_033899.8 15627792 15627894 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112070422 112070550 + NT_033899.8 15632838 15632966 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112070422 112070550 + NT_033899.8 15632838 15632966 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112070422 112070550 + NT_033899.8 15632838 15632966 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112070422 112070550 + NT_033899.8 15632838 15632966 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112070422 112070550 + NT_033899.8 15632838 15632966 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112071336 112071496 + NT_033899.8 15633752 15633912 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112071336 112071496 + NT_033899.8 15633752 15633912 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112071336 112071496 + NT_033899.8 15633752 15633912 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112071336 112071496 + NT_033899.8 15633752 15633912 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112071336 112071496 + NT_033899.8 15633752 15633912 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112071336 112071496 + NT_033899.8 15633752 15633912 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112072746 112072913 + NT_033899.8 15635162 15635329 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112072746 112072913 + NT_033899.8 15635162 15635329 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112072746 112072913 + NT_033899.8 15635162 15635329 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112072746 112072913 + NT_033899.8 15635162 15635329 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112072746 112072913 + NT_033899.8 15635162 15635329 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112072746 112072913 + NT_033899.8 15635162 15635329 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112084447 112084584 + NT_033899.8 15646863 15647000 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112084447 112084584 + NT_033899.8 15646863 15647000 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112084447 112084584 + NT_033899.8 15646863 15647000 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112084447 112084584 + NT_033899.8 15646863 15647000 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112084447 112084584 + NT_033899.8 15646863 15647000 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112084447 112084584 + NT_033899.8 15646863 15647000 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112085485 112085649 + NT_033899.8 15647901 15648065 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112085485 112085667 + NT_033899.8 15647901 15648083 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112085485 112085667 + NT_033899.8 15647901 15648083 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112085485 112085667 + NT_033899.8 15647901 15648083 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112085485 112085667 + NT_033899.8 15647901 15648083 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112085485 112085667 + NT_033899.8 15647901 15648083 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112086943 112087053 + NT_033899.8 15649359 15649469 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112086943 112087053 + NT_033899.8 15649359 15649469 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112086943 112087053 + NT_033899.8 15649359 15649469 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112086943 112087053 + NT_033899.8 15649359 15649469 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112086943 112087053 + NT_033899.8 15649359 15649469 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112086943 112087053 + NT_033899.8 15649359 15649469 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112088484 112088597 + NT_033899.8 15650900 15651013 + GeneID:83875 CDS GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 112088484 112088597 + NT_033899.8 15650900 15651013 + NP_001032367.2 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112088484 112088597 + NT_033899.8 15650900 15651013 + NP_001243326.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112088484 112088597 + NT_033899.8 15650900 15651013 + NP_001243327.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112088484 112088597 + NT_033899.8 15650900 15651013 + NP_001243329.1 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112088484 112088597 + NT_033899.8 15650900 15651013 + NP_114144.4 GeneID:83875 CDS GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112088598 112089652 + NT_033899.8 15651014 15652068 + NM_001037290.2 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001037290.2 -
9606 11 112088598 112089652 + NT_033899.8 15651014 15652068 + NM_001256397.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256397.1 -
9606 11 112088598 112089652 + NT_033899.8 15651014 15652068 + NM_001256398.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256398.1 -
9606 11 112088598 112089652 + NT_033899.8 15651014 15652068 + NM_001256400.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_001256400.1 -
9606 11 112088598 112089652 + NT_033899.8 15651014 15652068 + NM_031938.5 GeneID:83875 UTR GRCh37.p13-Primary Assembly NM_031938.5 -
9606 11 112088598 112089652 + NT_033899.8 15651014 15652068 + XM_005271692.1 GeneID:83875 UTR GRCh37.p13-Primary Assembly XM_005271692.1 -
9606 11 111771756 111771864 + NW_004929381.1 15451185 15451293 + NP_001033043.1 GeneID:85458 CDS CHM1_1.1-Primary Assembly NM_001037954.3 -
9606 11 111771756 111771864 + NW_004929381.1 15451185 15451293 + NP_219493.1 GeneID:85458 CDS CHM1_1.1-Primary Assembly NM_033425.4 -
9606 11 111772935 111773015 + NW_004929381.1 15452364 15452444 + NP_001033043.1 GeneID:85458 CDS CHM1_1.1-Primary Assembly NM_001037954.3 -
9606 11 111772935 111773015 + NW_004929381.1 15452364 15452444 + NP_219493.1 GeneID:85458 CDS CHM1_1.1-Primary Assembly NM_033425.4 -
9606 11 111773016 111776629 + NW_004929381.1 15452445 15456058 + NM_001037954.3 GeneID:85458 UTR CHM1_1.1-Primary Assembly NM_001037954.3 -
9606 11 111773016 111776629 + NW_004929381.1 15452445 15456058 + NM_033425.4 GeneID:85458 UTR CHM1_1.1-Primary Assembly NM_033425.4 -
9606 11 111797868 111798111 + NT_033899.8 15360284 15360527 + NM_001278542.1 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111797868 111846719 + NT_033899.8 15360284 15409135 + NM_001278542.1 GeneID:85458 RNA GRCh37.p13-Primary Assembly NM_001278542.1 best RefSeq;identical;N
9606 11 111797868 111893374 + NT_033899.8 15360284 15455790 + DIXDC1 GeneID:85458 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111800542 111800577 + NT_033899.8 15362958 15362993 + NM_001278542.1 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111800578 111800634 + NT_033899.8 15362994 15363050 + NP_001265471.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111807927 111808223 + NT_033899.8 15370343 15370639 + NM_001037954.3 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111807927 111893374 + NT_033899.8 15370343 15455790 + NM_001037954.3 GeneID:85458 RNA GRCh37.p13-Primary Assembly NM_001037954.3 best RefSeq;poor;N
9606 11 111808224 111808283 + NT_033899.8 15370640 15370699 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111835273 111835402 + NT_033899.8 15397689 15397818 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111835273 111835402 + NT_033899.8 15397689 15397818 + NP_001265471.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111839237 111839362 + NT_033899.8 15401653 15401778 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111839237 111839362 + NT_033899.8 15401653 15401778 + NP_001265471.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111844747 111844978 + NT_033899.8 15407163 15407394 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111844747 111844978 + NT_033899.8 15407163 15407394 + NP_001265471.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111845600 111845707 + NT_033899.8 15408016 15408123 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111845600 111845711 + NT_033899.8 15408016 15408127 + NP_001265471.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111845712 111846719 + NT_033899.8 15408128 15409135 + NM_001278542.1 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_001278542.1 -
9606 11 111848033 111848496 + NT_033899.8 15410449 15410912 + NM_033425.4 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111848033 111893374 + NT_033899.8 15410449 15455790 + NM_033425.4 GeneID:85458 RNA GRCh37.p13-Primary Assembly NM_033425.4 best RefSeq;poor;N
9606 11 111848497 111848519 + NT_033899.8 15410913 15410935 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111851462 111851574 + NT_033899.8 15413878 15413990 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111851462 111851574 + NT_033899.8 15413878 15413990 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111853064 111853211 + NT_033899.8 15415480 15415627 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111853064 111853211 + NT_033899.8 15415480 15415627 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111855956 111856045 + NT_033899.8 15418372 15418461 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111855956 111856045 + NT_033899.8 15418372 15418461 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111857595 111857648 + NT_033899.8 15420011 15420064 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111857595 111857648 + NT_033899.8 15420011 15420064 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111859729 111859779 + NT_033899.8 15422145 15422195 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111859729 111859779 + NT_033899.8 15422145 15422195 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111863139 111863243 + NT_033899.8 15425555 15425659 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111863139 111863243 + NT_033899.8 15425555 15425659 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111863675 111863728 + NT_033899.8 15426091 15426144 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111863675 111863728 + NT_033899.8 15426091 15426144 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111864220 111864312 + NT_033899.8 15426636 15426728 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111864220 111864312 + NT_033899.8 15426636 15426728 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111864393 111864464 + NT_033899.8 15426809 15426880 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111864393 111864464 + NT_033899.8 15426809 15426880 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111865743 111865832 + NT_033899.8 15428159 15428248 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111865743 111865832 + NT_033899.8 15428159 15428248 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111866127 111866288 + NT_033899.8 15428543 15428704 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111866127 111866288 + NT_033899.8 15428543 15428704 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111866804 111866870 + NT_033899.8 15429220 15429286 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111866804 111866870 + NT_033899.8 15429220 15429286 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111887415 111887520 + NT_033899.8 15449831 15449936 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111887415 111887520 + NT_033899.8 15449831 15449936 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111888501 111888609 + NT_033899.8 15450917 15451025 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111888501 111888609 + NT_033899.8 15450917 15451025 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111889680 111889760 + NT_033899.8 15452096 15452176 + NP_001033043.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111889680 111889760 + NT_033899.8 15452096 15452176 + NP_219493.1 GeneID:85458 CDS GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111889761 111893374 + NT_033899.8 15452177 15455790 + NM_001037954.3 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_001037954.3 -
9606 11 111889761 111893374 + NT_033899.8 15452177 15455790 + NM_033425.4 GeneID:85458 UTR GRCh37.p13-Primary Assembly NM_033425.4 -
9606 11 111789601 111789696 + NT_033899.8 15352017 15352112 + NM_080659.2 GeneID:91894 UTR GRCh37.p13-Primary Assembly NM_080659.2 -
9606 11 111789601 111797595 + NT_033899.8 15352017 15360011 + C11orf52 GeneID:91894 GENE GRCh37.p13-Primary Assembly - best RefSeq;identical;N
9606 11 111789601 111797595 + NT_033899.8 15352017 15360011 + NM_080659.2 GeneID:91894 RNA GRCh37.p13-Primary Assembly NM_080659.2 best RefSeq;identical;N
9606 11 111789697 111789728 + NT_033899.8 15352113 15352144 + NP_542390.2 GeneID:91894 CDS GRCh37.p13-Primary Assembly NM_080659.2 -
9606 11 111795050 111795087 + NT_033899.8 15357466 15357503 + NP_542390.2 GeneID:91894 CDS GRCh37.p13-Primary Assembly NM_080659.2 -
9606 11 111796377 111796438 + NT_033899.8 15358793 15358854 + NP_542390.2 GeneID:91894 CDS GRCh37.p13-Primary Assembly NM_080659.2 -
9606 11 111796684 111796923 + NT_033899.8 15359100 15359339 + NP_542390.2 GeneID:91894 CDS GRCh37.p13-Primary Assembly NM_080659.2 -
9606 11 111796924 111797595 + NT_033899.8 15359340 15360011 + NM_080659.2 GeneID:91894 UTR GRCh37.p13-Primary Assembly NM_080659.2 -
tests/test_mapping.py
+ 57
− 2
View file @ 4e47d2c3
......@@ -5,9 +5,13 @@ Tests for the mutalyzer.mapping module.
from __future__ import unicode_literals
import codecs
import os
import pytest
from mutalyzer.mapping import Converter
from mutalyzer.db.models import TranscriptMapping
from mutalyzer import mapping
pytestmark = pytest.mark.usefixtures('hg19_transcript_mappings')
......@@ -15,7 +19,7 @@ pytestmark = pytest.mark.usefixtures('hg19_transcript_mappings')
@pytest.fixture
def converter(output, hg19):
return Converter(hg19, output)
return mapping.Converter(hg19, output)
def test_converter(converter):
......@@ -322,3 +326,54 @@ def test_ins_seq_seq_c2chrom_reverse(converter):
"""
genomic = converter.c2chrom('NM_012459.2:c.10_11ins[TTT;ATC]')
assert genomic == 'NC_000011.9:g.111957482_111957483ins[GAT;AAA]'
def test_import_mapview(hg19):
original_count = TranscriptMapping.query.count()
group_label = 'GRCh37.p13-Primary Assembly'
path = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'data',
'hg19.chr11.111771755-112247252.seq_gene.sorted.md')
mapview = codecs.open(path, encoding='utf-8')
mapview_count = sum(1 for line in mapview
if line.split('\t')[12] == group_label
and line.split('\t')[11] == 'RNA')
mapview.seek(0)
mapping.import_from_mapview_file(hg19, mapview, group_label)
# Two transcripts were already in, the rest is new:
# - NR_028383.1
# - NM_012459.2
assert TranscriptMapping.query.count() == original_count + mapview_count - 2
# No changes here.
unchanged = TranscriptMapping.query.filter_by(accession='NM_012459').one()
assert unchanged.start == 111955524
assert unchanged.stop == 111957522
assert unchanged.exon_starts == [111955524, 111957364]
assert unchanged.exon_stops == [111956186, 111957522]
assert unchanged.cds == (111956019, 111957492)
# We made some artificial changes to the mapview file here.
updated = TranscriptMapping.query.filter_by(accession='NR_028383').one()
assert updated.start == 111955524
assert updated.stop == 111957525
assert updated.exon_starts == [111955524, 111956700, 111957364]
assert updated.exon_stops == [111956180, 111957034, 111957525]
# This is a new entry.
new = TranscriptMapping.query.filter_by(accession='NM_000317').one()
assert new.version == 2
assert new.start == 112097088
assert new.stop == 112104696
assert new.exon_starts == [112097088, 112099317, 112100931, 112101349,
112103886, 112104155]
assert new.exon_stops == [112097249, 112099396, 112100953, 112101405,
112103956, 112104696]
assert new.cds == (112097167, 112104278)
assert new.gene == 'PTS'
assert new.orientation == 'forward'
assert new.reference_type == 'refseq'
assert new.source == 'ncbi'
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