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mutalyzer
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2fc16d8c
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2fc16d8c
authored
10 years ago
by
Vermaat
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Use latest GRCh37.p13 in mapview import documentation
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@@ -62,11 +62,11 @@ genome assemblies as used by their `Map Viewer
For example, to import transcript mappings for the GRCh37 assembly, run the
following::
$ wget ftp://ftp.ncbi.nih.gov/genomes/
H_sapiens/ARCHIVE/BUILD.37.2/mapview
/seq_gene.md.gz
$ wget ftp://ftp.ncbi.
nlm.
nih.gov/genomes/
MapView/Homo_sapiens/sequence/ANNOTATION_RELEASE.105/initial_release
/seq_gene.md.gz
$ zcat seq_gene.md.gz | sort -t $'\t' -k 11,11 -k 2,2 > seq_gene.sorted.md
$ mutalyzer-admin assemblies import-mapview seq_gene.sorted.md 'GRCh37.p
2
-Primary Assembly'
$ mutalyzer-admin assemblies import-mapview seq_gene.sorted.md 'GRCh37.p
13
-Primary Assembly'
.. note:: The last argument, ``GRCh37.p
2
-Primary Assembly``, defines the group
.. note:: The last argument, ``GRCh37.p
13
-Primary Assembly``, defines the group
label to filter the file on. You would usually want to include it.
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