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Created with Raphaël 2.2.013Sep111098765432131Aug3029282726252423222120191817161514131211643130Jul28272423222117167632130Jun29282726252423222119171615109876Added a tool packageRemove framework filesChange versions to varMoved extensions to new moduleMove scripts to bammetricsHide log for tool testsFix pipeline without frameworkDelete duplicate resourcesMoved to other packageFix compile errorsRscript usable without core nowMove abstract commandlines function for Rscript and PythonMove test resourcesTools split into new modules, core and utils are compileable nowMoved core sourcesMove utils tests to utilsMoved config to utilsFix dependencyAdd dependenciesAdd dependenciesMoving utilsAdding utils moduleGenerate new moduleMove executable classes out of the coreMerge branch 'tooltests' into 'develop' Adding -o option to hide output from stdoutCapture stderrRedirecting output to a fileRedirecting output to a fileAdded -o optionAdding warningMore compact help textAdding output file, output not to stdout anymoreOutput to a file, no output to stdout anymoreStyle changesAdd output arg to sampletsvtojsonAdd output arg to biopet flagstatFixed argSimplify methodAdding more AnyVal for better support for other types