Commits · fe91eb82d961771b21c83ca3ee6b56ddcf0e41ae · Mirrors / biopet.biopet

Oct 16, 2015
- Style fix · c6ebdcae
  Peter van 't Hof authored 9 years ago
  
  c6ebdcae
Oct 15, 2015
- Rename file · f8785ed4
  Peter van 't Hof authored 9 years ago
  
  f8785ed4
- Remove some test and optimize code · c0d8c129
  Peter van 't Hof authored 9 years ago
  
  c0d8c129
- Each aligner has his own class now · 08bcca4d
  Peter van 't Hof authored 9 years ago
  
  08bcca4d
Oct 13, 2015
- Remove some testing · df83160f
  Peter van 't Hof authored 9 years ago
  
  df83160f
Oct 12, 2015
- Added a thread correction var · f03c70ff
  Peter van 't Hof authored 9 years ago
  
  f03c70ff
- Fixed zipped input files · cb2f2556
  Peter van 't Hof authored 9 years ago
  
  cb2f2556
- Fixed numberChunks in summary · 6f39a8ed
  Peter van 't Hof authored 9 years ago
  
  6f39a8ed
Oct 09, 2015
- Fix chunking · f4f1f4cb
  Peter van 't Hof authored 9 years ago
  
  f4f1f4cb
Oct 07, 2015
- Fix small bug · 55c9af30
  Peter van 't Hof authored 9 years ago
  
  55c9af30
Oct 05, 2015
- Removed out commented tests · b733ff34
  Peter van 't Hof authored 9 years ago
  
  b733ff34
Oct 02, 2015
- Fix code style warnings · 52928227
  Peter van 't Hof authored 9 years ago
  
  52928227
- Removed zcat step · 699c7baf
  Peter van 't Hof authored 9 years ago
  
  699c7baf
- Fixed graph issue · 47b02b54
  Peter van 't Hof authored 9 years ago
  
  47b02b54
- Fixed summary files of flexiprep · 5d5c30c1
  Peter van 't Hof authored 9 years ago
  
  5d5c30c1
Oct 01, 2015
- Fix for #210 · 3c228abe
  Peter van 't Hof authored 9 years ago
  3c228abe
Sep 28, 2015
- Fix for #210 · 910074b8
  Peter van 't Hof authored 9 years ago
  
  910074b8
Sep 24, 2015
- Fix import · 36fd8269
  Peter van 't Hof authored 9 years ago
  
  36fd8269
- Added FilePipes · 04210893
  Peter van 't Hof authored 9 years ago
  
  04210893
Sep 23, 2015
- Remove count tests · 839b0c12
  Peter van 't Hof authored 9 years ago
  
  839b0c12
- Remove intermediate · 2387d560
  Peter van 't Hof authored 9 years ago
  
  2387d560
Sep 22, 2015
- Remove old code · 2da7887f
  Peter van 't Hof authored 9 years ago
  
  2da7887f
- Convert mapping to sortsam for pipes · a952d8c4
  Peter van 't Hof authored 9 years ago
  
  a952d8c4
- Convert pipe to SortSam again · 9a3356a5
  Peter van 't Hof authored 9 years ago
  
  9a3356a5
- Moved sam file · bb300878
  Peter van 't Hof authored 9 years ago
  
  bb300878
- Use piping after bwamem · f7ea04a7
  Peter van 't Hof authored 9 years ago
  
  f7ea04a7
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Fixed case class · bd6eae2c
  Peter van 't Hof authored 9 years ago
  
  bd6eae2c
- Adding input files to check · 3c83721a
  Peter van 't Hof authored 9 years ago
  
  3c83721a
Sep 14, 2015
- Fix unit test · 1b160347
  Peter van 't Hof authored 9 years ago
  
  1b160347
Sep 13, 2015
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored 9 years ago
  
  f3343df9
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 05, 2015
- Switch bowtie and gsnap to fixed values · df1b7d19
  Peter van 't Hof authored 9 years ago
  
  df1b7d19
Sep 04, 2015
- Code style fix · 4ae12722
  Peter van 't Hof authored 9 years ago
  
  4ae12722
- Remove the need of merging the defaults anymore · 0586cbc2
  Peter van 't Hof authored 9 years ago
  
  0586cbc2
- Changing to SNAPSHOT version, this is following the maven convention · f550b637
  Peter van 't Hof authored 9 years ago
  
  f550b637
Aug 28, 2015
- No chunk_metrics when chunking is disabled · 04adff67
  Peter van 't Hof authored 9 years ago
  
  04adff67
Aug 25, 2015
- Fixed tophat unittests · 3644ce72
  Peter van 't Hof authored 9 years ago
  
  3644ce72
Aug 17, 2015
- Fix inversion · 92ae5a49
  Peter van 't Hof authored 9 years ago
  
  92ae5a49