Commits · e553b5ab8664bf943b61ea58be52d0ef31daae08 · Mirrors / biopet.biopet

Feb 05, 2016
- Fixed merge intermediate · e553b5ab
  Peter van 't Hof authored 9 years ago
  
  e553b5ab
- Added extension for fasta files · 2b630b63
  Peter van 't Hof authored 9 years ago
  
  2b630b63
Feb 02, 2016
- fixed default name for output file · 3efc0409
  Peter van 't Hof authored 9 years ago
  
  3efc0409
- Remove outputDir as output file · 3095b900
  Peter van 't Hof authored 9 years ago
  
  3095b900
- fixed output file of basecounter · 8a1dfa17
  Peter van 't Hof authored 9 years ago
  
  8a1dfa17
- Fixed summary jobs · 7eb2bf8d
  Peter van 't Hof authored 9 years ago
  
  7eb2bf8d
Feb 01, 2016
- Added test on main method · 162f02ed
  Peter van 't Hof authored 9 years ago
  
  162f02ed
- Added more testing · c7d28c03
  Peter van 't Hof authored 9 years ago
  
  c7d28c03
- Remove bed annotation · 6748aa4e
  Peter van 't Hof authored 9 years ago
  
  6748aa4e
Jan 29, 2016
- Added testing on Count classes · cc0f5341
  Peter van 't Hof authored 9 years ago
  
  cc0f5341
- Added basic tests · 03abff03
  Peter van 't Hof authored 9 years ago
  
  03abff03
- Fixed bammetrics tests · 2d566da7
  Peter van 't Hof authored 9 years ago
  
  2d566da7
- wgs and rna metrics now got config value to enable/disable them · 64134d46
  Peter van 't Hof authored 9 years ago
  
  64134d46
- Fixed units tests · 69009dc0
  Peter van 't Hof authored 9 years ago
  
  69009dc0
- switch to core rscript extension · 326a21e5
  Peter van 't Hof authored 9 years ago
  
  326a21e5
- fix code warnings · 33aa9cd8
  Peter van 't Hof authored 9 years ago
  
  33aa9cd8
- Added meta exon counts to pipeline · c294fbef
  Peter van 't Hof authored 9 years ago
  
  c294fbef
- Fixed scope · 62ff2fb2
  Peter van 't Hof authored 9 years ago
  
  62ff2fb2
Jan 28, 2016
- Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules · 29aebb21
  Peter van 't Hof authored 9 years ago
  
  # Conflicts: # public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/extensions/CustomVarScan.scala
  29aebb21
- Remove old unused code · 3cccfa85
  Peter van 't Hof authored 9 years ago
  
  3cccfa85
- Reformat · 90e97bb1
  Peter van 't Hof authored 9 years ago
  
  90e97bb1
- Added meta exons counts · 15df54b3
  Peter van 't Hof authored 9 years ago
  
  15df54b3
- Fixed gentrap tests · adf2e18f
  Peter van 't Hof authored 9 years ago
  
  adf2e18f
Jan 27, 2016
- Fix code warnings · 319f9274
  Peter van 't Hof authored 9 years ago
  
  319f9274
- Fixed createMetaExonCounts method · 9cae3390
  Peter van 't Hof authored 9 years ago
  
  9cae3390
- Combine overlapping genes in 1 thread · 8eae094a
  Peter van 't Hof authored 9 years ago
  
  8eae094a
- Merge branch 'feature-VarscanIntoShiva' into 'develop' · 52776123
  Wai Yi Leung authored 9 years ago
  
  Feature varscan into shiva Fixes #246 See merge request !308
  52776123
- Give mergeTables a extension · 0e7a025e
  Peter van 't Hof authored 9 years ago
  
  0e7a025e
- Added columnName to mergeTables · ddfa3aac
  Peter van 't Hof authored 9 years ago
  
  ddfa3aac
- Code improvement · 3427e4e1
  Peter van 't Hof authored 9 years ago
  
  3427e4e1
- fixed strandProtocol · 74d27805
  Peter van 't Hof authored 9 years ago
  
  74d27805
Jan 26, 2016
- Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules · 94749303
  Peter van 't Hof authored 9 years ago
  
  94749303
- Fixed single exon transcripts · d9410da9
  Peter van 't Hof authored 9 years ago
  
  d9410da9
- Disabled countType by default · 6b636bb7
  Peter van 't Hof authored 9 years ago
  
  6b636bb7
Jan 25, 2016
- Fixed htseq-count · 95ebd1c9
  Peter van 't Hof authored 9 years ago
  
  95ebd1c9
- Implemented LazyCheck · 175a5f6a
  Peter van 't Hof authored 9 years ago
  
  175a5f6a
- Fixed config conversions · a43106b2
  Peter van 't Hof authored 9 years ago
  
  a43106b2
- Fixed compile warning · 413bbf93
  Peter van 't Hof authored 9 years ago
  
  413bbf93
- Skipped flexiprep stats when flexiprep is not executed · 800ad479
  Peter van 't Hof authored 9 years ago
  
  800ad479
- Fixed bug in report · b2156b2c
  Peter van 't Hof authored 9 years ago
  
  b2156b2c