1. 04 Nov, 2015 1 commit
  2. 02 Nov, 2015 2 commits
    • Sander Bollen's avatar
      Merge branch 'feature-gears' into 'develop' · 8c42e046
      Sander Bollen authored
      Refactoring of gears
      
      @wyleung @h.mei 
      
      Resolves #219, #165 and #232
      
      Features to be added:
      
      * [x] Kraken-report to JSON -> for html Sunflare plot display
      * [x] R2, distinguish Single End or Paired End, this is used in Kraken for pairing and possible downstream alignments
      * [x] Kraken-json to summary-json
      * ~~[ ] Add bedtools genomecoverage (or similar tool to determine horizontal coverage and output bedgraph/wiggle)~~
      * [x] Support for RNA aligners aligned bams, these may contain multiple alignments for 1 sequence. SamToFastq is not handling this.
      * [x] Add report (sunflare plot)
      * [x] Add tests
      
      See merge request !241
      8c42e046
    • Peter van 't Hof's avatar
      89bc7d9a
  3. 31 Oct, 2015 1 commit
  4. 30 Oct, 2015 4 commits
  5. 29 Oct, 2015 12 commits
  6. 28 Oct, 2015 4 commits
  7. 27 Oct, 2015 5 commits
  8. 26 Oct, 2015 8 commits
  9. 25 Oct, 2015 1 commit
  10. 23 Oct, 2015 2 commits