Commits · dc8933b850399322b181f89b86af535cd8aa3333 · Mirrors / biopet.biopet

Aug 24, 2015
- Switch wipereads to biopet bed reader · dc8933b8
  Peter van 't Hof authored 9 years ago
  
  dc8933b8
- Switch to biopet bed parser · 02b7c60e
  Peter van 't Hof authored 9 years ago
  
  02b7c60e
- Moved clode statement to finally · bb0853a7
  Peter van 't Hof authored 9 years ago
  
  bb0853a7
- Added close to reader · 8faed309
  Peter van 't Hof authored 9 years ago
  
  8faed309
- Change name · 6ede8254
  Peter van 't Hof authored 9 years ago
  
  6ede8254
- Remove unused values · bfb88721
  Peter van 't Hof authored 9 years ago
  
  bfb88721
- Refactor RegionAfCount, 10-20 times faster now · cedd54be
  Peter van 't Hof authored 9 years ago
  
  cedd54be
- Sets utrs to None when not existing · 2b62e291
  Peter van 't Hof authored 9 years ago
  
  2b62e291
- Move combine method inside class · 186b5775
  Peter van 't Hof authored 9 years ago
  
  186b5775
- Fix match · 92f6a098
  Peter van 't Hof authored 9 years ago
  
  92f6a098
- switch exons en introns to simple lists · 35315f22
  Peter van 't Hof authored 9 years ago
  
  35315f22
- Added utr features · f365755d
  Peter van 't Hof authored 9 years ago
  
  f365755d
Aug 23, 2015
- Added UCSC header skipping · 68b01fdc
  Peter van 't Hof authored 9 years ago
  
  68b01fdc
- Added validation · 2ecea204
  Peter van 't Hof authored 9 years ago
  
  2ecea204
- Change _originals to val · 0e3d6e9f
  Peter van 't Hof authored 9 years ago
  
  0e3d6e9f
- Added lengths · 38d3970e
  Peter van 't Hof authored 9 years ago
  
  38d3970e
- cached sorting · 3483a1be
  Peter van 't Hof authored 9 years ago
  
  3483a1be
- Full bed record output · 66ce14ba
  Peter van 't Hof authored 9 years ago
  
  66ce14ba
Aug 22, 2015
- Add nested option to originals · 22064e83
  Peter van 't Hof authored 9 years ago
  
  22064e83
- Adding some logging · fb9e71f4
  Peter van 't Hof authored 9 years ago
  
  fb9e71f4
- Switch to originals · 59ae18bd
  Peter van 't Hof authored 9 years ago
  
  59ae18bd
- Fixed isSorted val · 31a37666
  Peter van 't Hof authored 9 years ago
  
  31a37666
- Fix SquishBed · 3b17be5a
  Peter van 't Hof authored 9 years ago
  
  3b17be5a
- Code style fixes · d7df6de4
  Peter van 't Hof authored 9 years ago
  
  d7df6de4
- Added write to file option · 8a204c14
  Peter van 't Hof authored 9 years ago
  
  8a204c14
- Adding originals to combined · 9748f8e8
  Peter van 't Hof authored 9 years ago
  
  9748f8e8
- Adding exons and introns · 1f4aead0
  Peter van 't Hof authored 9 years ago
  
  1f4aead0
- Switch strand to Option[Boolean] · b895d10e
  Peter van 't Hof authored 9 years ago
  
  b895d10e
Aug 21, 2015
- Added message to exception · b4d1119d
  Peter van 't Hof authored 9 years ago
  
  b4d1119d
Aug 20, 2015
- Added squish method · b461b79a
  Peter van 't Hof authored 9 years ago
  
  b461b79a
- Switch to other bed reader · b530509c
  Peter van 't Hof authored 9 years ago
  
  b530509c
- Added a generic bed reader · ffe6ea8c
  Peter van 't Hof authored 9 years ago
  
  ffe6ea8c
- Remove val, no need for it · 908ac3bd
  Peter van 't Hof authored 9 years ago
  
  908ac3bd
- Added a bedRecord with a parser · 1c09d9c2
  Peter van 't Hof authored 9 years ago
  
  1c09d9c2
Aug 19, 2015
- Added option to only use the exons from a bed file · 5f0a3858
  Peter van 't Hof authored 9 years ago
  
  5f0a3858
- Added scatterPlot as argument · 386149a3
  Peter van 't Hof authored 9 years ago
  
  386149a3
- Added a scatter plot · 981e80ef
  Peter van 't Hof authored 9 years ago
  
  981e80ef
- Combining duplicates records · 90fe82b4
  Peter van 't Hof authored 9 years ago
  
  90fe82b4
- Fixed type · 28ea893d
  Peter van 't Hof authored 9 years ago
  
  28ea893d
- Added a scatter plot · 18a44662
  Peter van 't Hof authored 9 years ago
  
  18a44662