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dc8933b8

Commit dc8933b8 authored 9 years ago by Peter van 't Hof

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Switch wipereads to biopet bed reader

parent 02b7c60e

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/AnnotateVcfWithBed.scala 1 addition, 1 deletion

.../scala/nl/lumc/sasc/biopet/tools/AnnotateVcfWithBed.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala 1 addition, 1 deletion

.../main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SquishBed.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/tools/SquishBed.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala 2 additions, 4 deletions

.../src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala 14 additions, 5 deletions

...a/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala

with 19 additions and 12 deletions

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