Commits · bbd005c3ba1ece3835f36ce4da06554d6dfbbf73 · Mirrors / biopet.biopet

Jan 28, 2015
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored 10 years ago
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored 10 years ago
  
  49ba8c53
- Adds finalBamFile function · c18e88d9
  Peter van 't Hof authored 10 years ago
  
  c18e88d9
- Mask yamsvp code · 89b2c3cd
  Peter van 't Hof authored 10 years ago
  
  89b2c3cd
- Move defaults · 4b16b7cd
  Peter van 't Hof authored 10 years ago
  
  4b16b7cd
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored 10 years ago
  
  fed34592
- Remove Queue command args · f60b77cc
  Peter van 't Hof authored 10 years ago
  
  f60b77cc
- Remove queue args from pipeline · 449202bd
  Peter van 't Hof authored 10 years ago
  
  449202bd
- Rename function · 8f104889
  Peter van 't Hof authored 10 years ago
  
  8f104889
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored 10 years ago
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored 10 years ago
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored 10 years ago
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored 10 years ago
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored 10 years ago
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored 10 years ago
  
  c05ab685
- Added init functions · dd732af4
  Peter van 't Hof authored 10 years ago
  
  dd732af4
- Added init functions · 715d7f82
  Peter van 't Hof authored 10 years ago
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored 10 years ago
  
  1410432c
Jan 26, 2015
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored 10 years ago
  
  7911ce0e
Jan 21, 2015
- Change Sage pipeline for multisample classes · edd629fa
  Peter van 't Hof authored 10 years ago
  
  edd629fa
- Added defaultSample and defaultLibrary · 789bfa8e
  Peter van 't Hof authored 10 years ago
  
  789bfa8e
- Added a template as example · a878479e
  Peter van 't Hof authored 10 years ago
  
  a878479e
- Change sample to var · 55378379
  Peter van 't Hof authored 10 years ago
  
  55378379
Jan 20, 2015
- Switch Sage pipeline to new abstract classes · 36c29d93
  Peter van 't Hof authored 10 years ago
  
  36c29d93
- New abstract classes for samples and libraries · f9cef581
  Peter van 't Hof authored 10 years ago
  
  f9cef581
- Fixed nullpointer · 1c6ea1d9
  Peter van 't Hof authored 10 years ago
  
  1c6ea1d9
- Changing pipeline to improved multisampleQScript · 33e6ef14
  Peter van 't Hof authored 10 years ago
  
  33e6ef14
- Simplify multisampleQscript · a5fb226c
  Peter van 't Hof authored 10 years ago
  
  a5fb226c
- Added a TODO to change files and strings · 96557540
  Peter van 't Hof authored 10 years ago
  
  96557540
Jan 19, 2015
- Fix on md5 check · d7c60cc3
  Peter van 't Hof authored 10 years ago
  
  d7c60cc3
- Remove unused vars · b3ae6caf
  Peter van 't Hof authored 10 years ago
  
  b3ae6caf
Jan 16, 2015
- make aln/sampe/samse jobs intermediate · 8e8b825e
  Peter van 't Hof authored 10 years ago
  
  8e8b825e
- Added bwa aln to mapping pipeline · bdc6999e
  Peter van 't Hof authored 10 years ago
  
  bdc6999e
- AddedOutput not required · 43955884
  Peter van 't Hof authored 10 years ago
  
  43955884
- Added sampe · ff81ebd3
  Peter van 't Hof authored 10 years ago
  
  ff81ebd3
- Added samse · 1f867d68
  Peter van 't Hof authored 10 years ago
  
  1f867d68
- Added bwa aln extension · 7bea64ef
  Peter van 't Hof authored 10 years ago
  
  7bea64ef
- Make new package for bwa · 36e763df
  Peter van 't Hof authored 10 years ago
  
  36e763df
- Move aligners to nl.lumc.sasc.biopet.exetensions · 695650c2
  Peter van 't Hof authored 10 years ago
  
  695650c2