Commits · b7ace90cfad468e36c762024bd57209593705f8a · Mirrors / biopet.biopet

29 Jan, 2015 1 commit
- Added wigToBigWig extension · b7ace90c
  Peter van 't Hof authored Jan 29, 2015
  
  b7ace90c
28 Jan, 2015 6 commits
- Merge branch 'feature-improve_multisample' into 'develop' · c2fb1f5b
  bow authored Jan 28, 2015
```
Feature improve multisample

Final fix for #55

See merge request !72
```
  c2fb1f5b
- fix scala docs (again) · b61616ea
  Peter van 't Hof authored Jan 28, 2015
  
  b61616ea
- Fix scala docs · 9371bf0f
  Peter van 't Hof authored Jan 28, 2015
  
  9371bf0f
- Renaming values · 33f456b9
  Peter van 't Hof authored Jan 28, 2015
  
  33f456b9
- Remove unused code · 413f0bd1
  Peter van 't Hof authored Jan 28, 2015
  
  413f0bd1
- Renaming values · bbd005c3
  Peter van 't Hof authored Jan 28, 2015
  
  bbd005c3
27 Jan, 2015 18 commits
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored Jan 27, 2015
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored Jan 27, 2015
  
  49ba8c53
- Adds finalBamFile function · c18e88d9
  Peter van 't Hof authored Jan 27, 2015
  
  c18e88d9
- Mask yamsvp code · 89b2c3cd
  Peter van 't Hof authored Jan 27, 2015
  
  89b2c3cd
- Move defaults · 4b16b7cd
  Peter van 't Hof authored Jan 27, 2015
  
  4b16b7cd
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored Jan 27, 2015
  
  fed34592
- Remove Queue command args · f60b77cc
  Peter van 't Hof authored Jan 27, 2015
  
  f60b77cc
- Remove queue args from pipeline · 449202bd
  Peter van 't Hof authored Jan 27, 2015
  
  449202bd
- Rename function · 8f104889
  Peter van 't Hof authored Jan 27, 2015
  
  8f104889
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored Jan 27, 2015
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored Jan 27, 2015
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored Jan 27, 2015
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored Jan 27, 2015
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored Jan 27, 2015
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored Jan 27, 2015
  
  c05ab685
- Added init functions · dd732af4
  Peter van 't Hof authored Jan 27, 2015
  
  dd732af4
- Added init functions · 715d7f82
  Peter van 't Hof authored Jan 27, 2015
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored Jan 27, 2015
  
  1410432c
26 Jan, 2015 1 commit
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored Jan 26, 2015
  
  7911ce0e
21 Jan, 2015 4 commits
- Change Sage pipeline for multisample classes · edd629fa
  Peter van 't Hof authored Jan 21, 2015
  
  edd629fa
- Added defaultSample and defaultLibrary · 789bfa8e
  Peter van 't Hof authored Jan 21, 2015
  
  789bfa8e
- Added a template as example · a878479e
  Peter van 't Hof authored Jan 21, 2015
  
  a878479e
- Change sample to var · 55378379
  Peter van 't Hof authored Jan 21, 2015
  
  55378379
20 Jan, 2015 7 commits
- Switch Sage pipeline to new abstract classes · 36c29d93
  Peter van 't Hof authored Jan 20, 2015
  
  36c29d93
- New abstract classes for samples and libraries · f9cef581
  Peter van 't Hof authored Jan 20, 2015
  
  f9cef581
- Fixed nullpointer · 1c6ea1d9
  Peter van 't Hof authored Jan 20, 2015
  
  1c6ea1d9
- Changing pipeline to improved multisampleQScript · 33e6ef14
  Peter van 't Hof authored Jan 20, 2015
  
  33e6ef14
- Simplify multisampleQscript · a5fb226c
  Peter van 't Hof authored Jan 20, 2015
  
  a5fb226c
- Merge branch 'feature-improve_config_report' into 'develop' · 1dc0cde8
  bow authored Jan 20, 2015
```
Feature improve config report

For for #99

Also some preparations for #55

See merge request !71
```
  1dc0cde8
- Added a TODO to change files and strings · 96557540
  Peter van 't Hof authored Jan 20, 2015
  
  96557540
19 Jan, 2015 2 commits
- Fix on md5 check · d7c60cc3
  Peter van 't Hof authored Jan 19, 2015
  
  d7c60cc3
- Remove unused vars · b3ae6caf
  Peter van 't Hof authored Jan 19, 2015
  
  b3ae6caf
16 Jan, 2015 1 commit
- make aln/sampe/samse jobs intermediate · 8e8b825e
  Peter van 't Hof authored Jan 16, 2015
  
  8e8b825e