Commits · 7b8a06ed5722e3aa796bc426466b613e5b25f22a · Mirrors / biopet.biopet

Feb 14, 2015
- Fix outputDirs · 7b8a06ed
  Peter van 't Hof authored 10 years ago
  
  7b8a06ed
- Fix dependencies · 1926c8f8
  Peter van 't Hof authored 10 years ago
  
  1926c8f8
Feb 13, 2015
- Fix output dirs · d5b3661d
  Peter van 't Hof authored 10 years ago
  
  d5b3661d
- remove timestamp · 3152e5fc
  Peter van 't Hof authored 10 years ago
  
  3152e5fc
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 12, 2015
- Added star-2pass and stampy to data provider, not having 192 unit tests · 62308c50
  Peter van 't Hof authored 10 years ago
  
  62308c50
- Added 128 unit tests to mapping pipeline · 36641e26
  Peter van 't Hof authored 10 years ago
  
  36641e26
- Fix "/" format errors · dd6abc7e
  Peter van 't Hof authored 10 years ago
  
  dd6abc7e
- Change outputDir to File · 8ca365cb
  Peter van 't Hof authored 10 years ago
  
  8ca365cb
Feb 10, 2015
- Add bam2wig in imls · 3a4a8459
  Peter van 't Hof authored 10 years ago
  
  3a4a8459
Feb 09, 2015
- Added bam2wig · 661f4ebd
  Peter van 't Hof authored 10 years ago
  
  661f4ebd
- Added optional bam2wig step · fb5ce3e0
  Peter van 't Hof authored 10 years ago
  
  fb5ce3e0
Feb 05, 2015
- Remove redundant check on outputDir character · 700ced12
  bow authored 10 years ago
  
  700ced12
Feb 03, 2015
- Skip extractIfNeeded on R2 when not paired · 481a7a96
  Peter van 't Hof authored 10 years ago
  
  481a7a96
- Change to option types · 71eb5183
  Peter van 't Hof authored 10 years ago
  
  71eb5183
- Expose sample ID and library ID as command line flags in mapping pipeline · 904a99b9
  bow authored 10 years ago
  
  904a99b9
- Use requirements check on mapping and flexiprep pipeline · a9c9dfbd
  bow authored 10 years ago
  
  a9c9dfbd
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored 10 years ago
  
  ad0c55bc
Jan 30, 2015
- Aligner BWA typo and Mapping clean paths · ccd0ed71
  Wai Yi Leung authored 10 years ago
  
  ccd0ed71
Jan 28, 2015
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Adds finalBamFile function · c18e88d9
  Peter van 't Hof authored 10 years ago
  
  c18e88d9
- Remove Queue command args · f60b77cc
  Peter van 't Hof authored 10 years ago
  
  f60b77cc
Jan 19, 2015
- Remove unused vars · b3ae6caf
  Peter van 't Hof authored 10 years ago
  
  b3ae6caf
Jan 16, 2015
- make aln/sampe/samse jobs intermediate · 8e8b825e
  Peter van 't Hof authored 10 years ago
  
  8e8b825e
- Added bwa aln to mapping pipeline · bdc6999e
  Peter van 't Hof authored 10 years ago
  
  bdc6999e
- Move aligners to nl.lumc.sasc.biopet.exetensions · 695650c2
  Peter van 't Hof authored 10 years ago
  
  695650c2
- Fix RGPI config var · 9c2720bf
  Peter van 't Hof authored 10 years ago
  
  9c2720bf
- Remove unused function · 14fe91d9
  Peter van 't Hof authored 10 years ago
  
  14fe91d9
Dec 09, 2014
- Change pom version · 06536548
  Peter van 't Hof authored 10 years ago
  
  06536548
- Change Pom to version 0.2.0 · 1572cb02
  Peter van 't Hof authored 10 years ago
  
  1572cb02
Dec 05, 2014
- Added License to header of all files · b2a02952
  Peter van 't Hof authored 10 years ago
  
  b2a02952
Dec 04, 2014
- Change pom to version 0.2.0-rc1 · 203b60cc
  Peter van 't Hof authored 10 years ago
  
  203b60cc
Nov 25, 2014
- Update IntelliJ files · 5abe8248
  bow authored 10 years ago
  
  5abe8248
Nov 24, 2014
- now works with parent poms · e07befed
  Peter van 't Hof authored 10 years ago
  
  e07befed
Nov 22, 2014
- Change versions dependencies to ${project.version} · 904b43f2
  Peter van 't Hof authored 10 years ago
  
  904b43f2
- Added dependency · 3e431336
  Peter van 't Hof authored 10 years ago
  
  3e431336
- Added mapping as separated artifact · eac4cd7b
  Peter van 't Hof authored 10 years ago
  
  eac4cd7b