Commits · 5b01a7d9fbe7323dcdf0a694051040adfcccb164 · Mirrors / biopet.biopet

Jun 10, 2014
- example jsons changed/added · 5b01a7d9
  Peter van 't Hof authored 10 years ago
  
  5b01a7d9
- Changed filenames of bam files at star · 3990eb3f
  Peter van 't Hof authored 10 years ago
  
  3990eb3f
- Added outFileNamePrefix option · 7d08761a
  Peter van 't Hof authored 10 years ago
  
  7d08761a
Jun 09, 2014
- Added star 2pass mode · 3c2d0da7
  Peter van 't Hof authored 10 years ago
  
  3c2d0da7
Jun 06, 2014
- Added merge config · 5a4df715
  Peter van 't Hof authored 10 years ago
  
  5a4df715
Jun 03, 2014
- Moved to mapping maven app · 525e2ecc
  Peter van 't Hof authored 10 years ago
  
  525e2ecc
May 27, 2014
- Added general trait (BiopetQScript) that now have multisample functions · 09190f82
  Peter van 't Hof authored 10 years ago
  
  09190f82
May 26, 2014
- Gatk now uses the mapping module · b3553528
  Peter van 't Hof authored 10 years ago
  
  b3553528
- Added scala files to jar and added a main class for each pipeline · 302c6fff
  Peter van 't Hof authored 10 years ago
  
  302c6fff
May 21, 2014
- - Fixed output file for star · 30fe43b7
  Peter van 't Hof authored 10 years ago
  
  30fe43b7
- - Fixed scattercounts · 630092d5
  Peter van 't Hof authored 10 years ago
  
  630092d5
- - output file for star · da6a6ef2
  Peter van 't Hof authored 10 years ago
  
  da6a6ef2
- - output file for star · 23084ff1
  Peter van 't Hof authored 10 years ago
  
  23084ff1
May 20, 2014
- - fixed namespaceing in AddOrReplaceReadGroups · da66790f
  Peter van 't Hof authored 10 years ago
  
  da66790f
- - fixed namespaceing in AddOrReplaceReadGroups · eb23b56e
  Peter van 't Hof authored 10 years ago
  
  eb23b56e
- - Fixed output of star · 6ebb058a
  Peter van 't Hof authored 10 years ago
  
  6ebb058a
- - Fixed input field on markduplicates in mapping module · 4785e578
  Peter van 't Hof authored 10 years ago
  
  4785e578
- - Fixed memory issue in Variant Recalibration · 3f2913f8
  Peter van 't Hof authored 10 years ago
  
  3f2913f8
- - Added wrapper for Star · ca2905e5
  Peter van 't Hof authored 10 years ago
  
  - Added a mapping module (not yet used in Gatk) - Added VariantRecalibrator to Gatk
  ca2905e5