Commits · 54219bcb6418f95a42f00d6e9e92290893b7efb9 · Mirrors / biopet.biopet

08 Feb, 2016 4 commits
- Fix insertsize plots · 54219bcb
  Peter van 't Hof authored Feb 08, 2016
  
  54219bcb
- Fix merge file · cd4a8f4c
  Peter van 't Hof authored Feb 08, 2016
  
  cd4a8f4c
- Hide insertsize plot on single end runs · f069ee1e
  Peter van 't Hof authored Feb 08, 2016
  
  f069ee1e
- Hide R2 plots when single end · a5bf52fd
  Peter van 't Hof authored Feb 08, 2016
  
  a5bf52fd
07 Feb, 2016 2 commits
- Fix order is sections · 1fe8c904
  Peter van 't Hof authored Feb 07, 2016
  
  1fe8c904
- Always show alignment plot · 0ec8dbd0
  Peter van 't Hof authored Feb 07, 2016
  
  0ec8dbd0
05 Feb, 2016 9 commits
- Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules · 7bda4f7b
  Peter van 't Hof authored Feb 05, 2016
```
Conflicts:
	public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTrait.scala
```
  7bda4f7b
- Merge branch 'feature-qiime' into 'develop' · acbbc173
  Wai Yi Leung authored Feb 05, 2016
```
Feature qiime

Mainly for project 122

See merge request !287
```
  acbbc173
- Fixed merge intermediate · e553b5ab
  Peter van 't Hof authored Feb 05, 2016
  
  e553b5ab
- Added extension for fasta files · 2b630b63
  Peter van 't Hof authored Feb 05, 2016
  
  2b630b63
- Style fixes · 6e62a69e
  Peter van 't Hof authored Feb 05, 2016
  
  6e62a69e
- Added testing for qiime biom to krona method · 60d0fb74
  Peter van 't Hof authored Feb 05, 2016
  
  60d0fb74
- Added testing for kraken to krona method · 6b8b3a37
  Peter van 't Hof authored Feb 05, 2016
  
  6b8b3a37
- Fixed tests · 768f5596
  Peter van 't Hof authored Feb 05, 2016
  
  768f5596
- Added documentation · 2bfef3ed
  Peter van 't Hof authored Feb 05, 2016
  
  2bfef3ed
04 Feb, 2016 3 commits
- Added testing to gears pipeline · ff181760
  Peter van 't Hof authored Feb 04, 2016
  
  ff181760
- Added gears to multi mapping · 0ecd6778
  Peter van 't Hof authored Feb 04, 2016
  
  0ecd6778
- Added more methods to test · 95882d8e
  Peter van 't Hof authored Feb 04, 2016
  
  95882d8e
02 Feb, 2016 7 commits
- Fixed bug in Ln · 53cc2a4d
  Peter van 't Hof authored Feb 02, 2016
  
  53cc2a4d
- Added md5 check to pipeline · f941cb35
  Peter van 't Hof authored Feb 02, 2016
  
  f941cb35
- Merge remote-tracking branch 'remotes/origin/develop' into feature-qiime · b81ad8bb
  Peter van 't Hof authored Feb 02, 2016
  
  b81ad8bb
- fixed default name for output file · 3efc0409
  Peter van 't Hof authored Feb 02, 2016
  
  3efc0409
- Remove outputDir as output file · 3095b900
  Peter van 't Hof authored Feb 02, 2016
  
  3095b900
- fixed output file of basecounter · 8a1dfa17
  Peter van 't Hof authored Feb 02, 2016
  
  8a1dfa17
- Fixed summary jobs · 7eb2bf8d
  Peter van 't Hof authored Feb 02, 2016
  
  7eb2bf8d
01 Feb, 2016 3 commits
- Added test on main method · 162f02ed
  Peter van 't Hof authored Feb 01, 2016
  
  162f02ed
- Added more testing · c7d28c03
  Peter van 't Hof authored Feb 01, 2016
  
  c7d28c03
- Remove bed annotation · 6748aa4e
  Peter van 't Hof authored Feb 01, 2016
  
  6748aa4e
29 Jan, 2016 9 commits
- Added testing on Count classes · cc0f5341
  Peter van 't Hof authored Jan 29, 2016
  
  cc0f5341
- Added basic tests · 03abff03
  Peter van 't Hof authored Jan 29, 2016
  
  03abff03
- Fixed bammetrics tests · 2d566da7
  Peter van 't Hof authored Jan 29, 2016
  
  2d566da7
- wgs and rna metrics now got config value to enable/disable them · 64134d46
  Peter van 't Hof authored Jan 29, 2016
  
  64134d46
- Fixed units tests · 69009dc0
  Peter van 't Hof authored Jan 29, 2016
  
  69009dc0
- switch to core rscript extension · 326a21e5
  Peter van 't Hof authored Jan 29, 2016
  
  326a21e5
- fix code warnings · 33aa9cd8
  Peter van 't Hof authored Jan 29, 2016
  
  33aa9cd8
- Added meta exon counts to pipeline · c294fbef
  Peter van 't Hof authored Jan 29, 2016
  
  c294fbef
- Fixed scope · 62ff2fb2
  Peter van 't Hof authored Jan 29, 2016
  
  62ff2fb2
28 Jan, 2016 3 commits
- Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules · 29aebb21
  Peter van 't Hof authored Jan 28, 2016
```
# Conflicts:
#	public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/extensions/CustomVarScan.scala
```
  29aebb21
- Remove old unused code · 3cccfa85
  Peter van 't Hof authored Jan 28, 2016
  
  3cccfa85
- Reformat · 90e97bb1
  Peter van 't Hof authored Jan 28, 2016
  
  90e97bb1