Commits · 3e4e6bad4946be2cacafcd6bb09a848ab7f93132 · Mirrors / biopet.biopet

Feb 02, 2015
- Merge branch 'develop' into feature-Chipcap · 3e4e6bad
  bow authored 10 years ago
  
  Conflicts: public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala
  3e4e6bad
- made creating bam file with function createFile(*.bam) · a42f82e6
  Sander van der Zeeuw authored 10 years ago
  
  a42f82e6
Jan 30, 2015
- fixed output_dir name bug · ea210687
  Sander van der Zeeuw authored 10 years ago
  
  ea210687
Jan 29, 2015
- Merge branch 'feature-wigToBigWig' into 'develop' · 9691531b
  bow authored 10 years ago
  
  Feature wig to big wig Added a extension for #86 See merge request !74
  9691531b
- Add version comment · 32731cbe
  Peter van 't Hof authored 10 years ago
  
  32731cbe
- bug fix in Carp pipeline · 1d0235fe
  Sander van der Zeeuw authored 10 years ago
  
  1d0235fe
- Added changes for new sampling handling · 7734e7d3
  Sander van der Zeeuw authored 10 years ago
  
  7734e7d3
- Merge branch 'develop' into feature-Chipcap · cfd06a1e
  Sander van der Zeeuw authored 10 years ago
  
  cfd06a1e
- bug fixes in carp pipeline · 002c7f8f
  Sander van der Zeeuw authored 10 years ago
  
  002c7f8f
- bug fixes for macs2 wrapper · dbff8c07
  Sander van der Zeeuw authored 10 years ago
  
  dbff8c07
- Fix args · 41264b83
  Peter van 't Hof authored 10 years ago
  
  41264b83
- Fix scala docs format error · 2d0f6129
  Peter van 't Hof authored 10 years ago
  
  2d0f6129
- Added wigToBigWig extension · b7ace90c
  Peter van 't Hof authored 10 years ago
  
  b7ace90c
Jan 28, 2015
- Merge branch 'feature-improve_multisample' into 'develop' · c2fb1f5b
  bow authored 10 years ago
  
  Feature improve multisample Final fix for #55 See merge request !72
  c2fb1f5b
- fix scala docs (again) · b61616ea
  Peter van 't Hof authored 10 years ago
  
  b61616ea
- Fix scala docs · 9371bf0f
  Peter van 't Hof authored 10 years ago
  
  9371bf0f
- Renaming values · 33f456b9
  Peter van 't Hof authored 10 years ago
  
  33f456b9
- Remove unused code · 413f0bd1
  Peter van 't Hof authored 10 years ago
  
  413f0bd1
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored 10 years ago
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored 10 years ago
  
  49ba8c53
- Adds finalBamFile function · c18e88d9
  Peter van 't Hof authored 10 years ago
  
  c18e88d9
- Mask yamsvp code · 89b2c3cd
  Peter van 't Hof authored 10 years ago
  
  89b2c3cd
- Move defaults · 4b16b7cd
  Peter van 't Hof authored 10 years ago
  
  4b16b7cd
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored 10 years ago
  
  fed34592
- Remove Queue command args · f60b77cc
  Peter van 't Hof authored 10 years ago
  
  f60b77cc
- Remove queue args from pipeline · 449202bd
  Peter van 't Hof authored 10 years ago
  
  449202bd
- Rename function · 8f104889
  Peter van 't Hof authored 10 years ago
  
  8f104889
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored 10 years ago
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored 10 years ago
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored 10 years ago
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored 10 years ago
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored 10 years ago
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored 10 years ago
  
  c05ab685
- Added init functions · dd732af4
  Peter van 't Hof authored 10 years ago
  
  dd732af4
- Added init functions · 715d7f82
  Peter van 't Hof authored 10 years ago
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored 10 years ago
  
  1410432c
Jan 26, 2015
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored 10 years ago
  
  7911ce0e
Jan 21, 2015
- Change Sage pipeline for multisample classes · edd629fa
  Peter van 't Hof authored 10 years ago
  
  edd629fa
- Added defaultSample and defaultLibrary · 789bfa8e
  Peter van 't Hof authored 10 years ago
  
  789bfa8e