Commits · 3ce22c45b307ca165e33c688fd7da11a4544c7a6 · Mirrors / biopet.biopet

Feb 04, 2015
- Added queue wrapper · 3ce22c45
  Peter van 't Hof authored 10 years ago
  
  3ce22c45
- Change name · 9c0409f6
  Peter van 't Hof authored 10 years ago
  
  9c0409f6
- Added general stats · 11a6c2db
  Peter van 't Hof authored 10 years ago
  
  11a6c2db
- Reverse colors on heatmap · 612be8f7
  Peter van 't Hof authored 10 years ago
  
  612be8f7
- Added better debug information for the R scripts · 2945cb4a
  Peter van 't Hof authored 10 years ago
  
  2945cb4a
- Added AD fields · 41064621
  Peter van 't Hof authored 10 years ago
  
  41064621
- Added thread scattering · fd22b885
  Peter van 't Hof authored 10 years ago
  
  fd22b885
Feb 03, 2015
- Prep for paralyzation · b178746f
  Peter van 't Hof authored 10 years ago
  
  b178746f
Jan 29, 2015
- Added dendrogram plot · 465b6997
  Peter van 't Hof authored 10 years ago
  
  465b6997
- Change color scale to fix clustering and added a dendrogram plot · 5dc0f7a4
  Peter van 't Hof authored 10 years ago
  
  5dc0f7a4
- Added allele overlap heatmap · 55ca079a
  Peter van 't Hof authored 10 years ago
  
  55ca079a
Jan 28, 2015
- Merge branch 'develop' into feature-vcf_stats · ca4fb8bd
  Peter van 't Hof authored 10 years ago
  
  ca4fb8bd
- Merge branch 'feature-improve_multisample' into 'develop' · c2fb1f5b
  bow authored 10 years ago
  
  Feature improve multisample Final fix for #55 See merge request !72
  c2fb1f5b
- fix scala docs (again) · b61616ea
  Peter van 't Hof authored 10 years ago
  
  b61616ea
- Fix scala docs · 9371bf0f
  Peter van 't Hof authored 10 years ago
  
  9371bf0f
- Renaming values · 33f456b9
  Peter van 't Hof authored 10 years ago
  
  33f456b9
- Remove unused code · 413f0bd1
  Peter van 't Hof authored 10 years ago
  
  413f0bd1
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
- Change color on heatmap · d64c15aa
  Peter van 't Hof authored 10 years ago
  
  d64c15aa
Jan 27, 2015
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored 10 years ago
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored 10 years ago
  
  49ba8c53
- Adds finalBamFile function · c18e88d9
  Peter van 't Hof authored 10 years ago
  
  c18e88d9
- Mask yamsvp code · 89b2c3cd
  Peter van 't Hof authored 10 years ago
  
  89b2c3cd
- Move defaults · 4b16b7cd
  Peter van 't Hof authored 10 years ago
  
  4b16b7cd
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored 10 years ago
  
  fed34592
- Remove Queue command args · f60b77cc
  Peter van 't Hof authored 10 years ago
  
  f60b77cc
- Remove queue args from pipeline · 449202bd
  Peter van 't Hof authored 10 years ago
  
  449202bd
- Rename function · 8f104889
  Peter van 't Hof authored 10 years ago
  
  8f104889
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored 10 years ago
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored 10 years ago
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored 10 years ago
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored 10 years ago
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored 10 years ago
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored 10 years ago
  
  c05ab685
- Added init functions · dd732af4
  Peter van 't Hof authored 10 years ago
  
  dd732af4
- Added init functions · 715d7f82
  Peter van 't Hof authored 10 years ago
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored 10 years ago
  
  1410432c
Jan 26, 2015
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored 10 years ago
  
  7911ce0e
- Added QUAL value · b686cbd4
  Peter van 't Hof authored 10 years ago
  
  b686cbd4
- Added VcfStats to executable · c1848b38
  Peter van 't Hof authored 10 years ago
  
  c1848b38