Commits · 2945cb4a1e12711ad3856f5cc59a24b785265dc9 · Mirrors / biopet.biopet

Feb 04, 2015
- Added better debug information for the R scripts · 2945cb4a
  Peter van 't Hof authored 10 years ago
  
  2945cb4a
- Added AD fields · 41064621
  Peter van 't Hof authored 10 years ago
  
  41064621
- Added thread scattering · fd22b885
  Peter van 't Hof authored 10 years ago
  
  fd22b885
Feb 03, 2015
- Prep for paralyzation · b178746f
  Peter van 't Hof authored 10 years ago
  
  b178746f
Jan 29, 2015
- Added dendrogram plot · 465b6997
  Peter van 't Hof authored 10 years ago
  
  465b6997
- Change color scale to fix clustering and added a dendrogram plot · 5dc0f7a4
  Peter van 't Hof authored 10 years ago
  
  5dc0f7a4
- Added allele overlap heatmap · 55ca079a
  Peter van 't Hof authored 10 years ago
  
  55ca079a
Jan 28, 2015
- fix scala docs (again) · b61616ea
  Peter van 't Hof authored 10 years ago
  
  b61616ea
- Fix scala docs · 9371bf0f
  Peter van 't Hof authored 10 years ago
  
  9371bf0f
- Renaming values · 33f456b9
  Peter van 't Hof authored 10 years ago
  
  33f456b9
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
- Change color on heatmap · d64c15aa
  Peter van 't Hof authored 10 years ago
  
  d64c15aa
Jan 27, 2015
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored 10 years ago
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored 10 years ago
  
  49ba8c53
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored 10 years ago
  
  fed34592
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored 10 years ago
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored 10 years ago
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored 10 years ago
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored 10 years ago
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored 10 years ago
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored 10 years ago
  
  c05ab685
- Added init functions · 715d7f82
  Peter van 't Hof authored 10 years ago
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored 10 years ago
  
  1410432c
Jan 26, 2015
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored 10 years ago
  
  7911ce0e
- Added QUAL value · b686cbd4
  Peter van 't Hof authored 10 years ago
  
  b686cbd4
Jan 22, 2015
- Fix xy plot · 1a782ccf
  Peter van 't Hof authored 10 years ago
  
  1a782ccf
- Added plots · 48798284
  Peter van 't Hof authored 10 years ago
  
  48798284
Jan 21, 2015
- Added defaultSample and defaultLibrary · 789bfa8e
  Peter van 't Hof authored 10 years ago
  
  789bfa8e
- Added a template as example · a878479e
  Peter van 't Hof authored 10 years ago
  
  a878479e
- Change sample to var · 55378379
  Peter van 't Hof authored 10 years ago
  
  55378379
Jan 20, 2015
- New abstract classes for samples and libraries · f9cef581
  Peter van 't Hof authored 10 years ago
  
  f9cef581
- Fixed nullpointer · 1c6ea1d9
  Peter van 't Hof authored 10 years ago
  
  1c6ea1d9
- Changes in format of heatmap · 5267fdf9
  Sander van der Zeeuw authored 10 years ago
  
  5267fdf9
- Simplify multisampleQscript · a5fb226c
  Peter van 't Hof authored 10 years ago
  
  a5fb226c
- Added a TODO to change files and strings · 96557540
  Peter van 't Hof authored 10 years ago
  
  96557540
Jan 19, 2015
- Fix on md5 check · d7c60cc3
  Peter van 't Hof authored 10 years ago
  
  d7c60cc3
Jan 16, 2015
- Added bwa aln to mapping pipeline · bdc6999e
  Peter van 't Hof authored 10 years ago
  
  bdc6999e
- AddedOutput not required · 43955884
  Peter van 't Hof authored 10 years ago
  
  43955884
- Added sampe · ff81ebd3
  Peter van 't Hof authored 10 years ago
  
  ff81ebd3
- Added samse · 1f867d68
  Peter van 't Hof authored 10 years ago
  
  1f867d68