Commits · 186b5775c7ad9406f1b1b839593e3ff155481c31 · Mirrors / biopet.biopet

Aug 24, 2015
- Move combine method inside class · 186b5775
  Peter van 't Hof authored 9 years ago
  
  186b5775
- Fix match · 92f6a098
  Peter van 't Hof authored 9 years ago
  
  92f6a098
- switch exons en introns to simple lists · 35315f22
  Peter van 't Hof authored 9 years ago
  
  35315f22
- Added utr features · f365755d
  Peter van 't Hof authored 9 years ago
  
  f365755d
Aug 23, 2015
- Added UCSC header skipping · 68b01fdc
  Peter van 't Hof authored 9 years ago
  
  68b01fdc
- Added validation · 2ecea204
  Peter van 't Hof authored 9 years ago
  
  2ecea204
- Change _originals to val · 0e3d6e9f
  Peter van 't Hof authored 9 years ago
  
  0e3d6e9f
- Added lengths · 38d3970e
  Peter van 't Hof authored 9 years ago
  
  38d3970e
- cached sorting · 3483a1be
  Peter van 't Hof authored 9 years ago
  
  3483a1be
- Full bed record output · 66ce14ba
  Peter van 't Hof authored 9 years ago
  
  66ce14ba
Aug 22, 2015
- Add nested option to originals · 22064e83
  Peter van 't Hof authored 9 years ago
  
  22064e83
- Adding some logging · fb9e71f4
  Peter van 't Hof authored 9 years ago
  
  fb9e71f4
- Switch to originals · 59ae18bd
  Peter van 't Hof authored 9 years ago
  
  59ae18bd
- Fixed isSorted val · 31a37666
  Peter van 't Hof authored 9 years ago
  
  31a37666
- Fix SquishBed · 3b17be5a
  Peter van 't Hof authored 9 years ago
  
  3b17be5a
- Code style fixes · d7df6de4
  Peter van 't Hof authored 9 years ago
  
  d7df6de4
- Added write to file option · 8a204c14
  Peter van 't Hof authored 9 years ago
  
  8a204c14
- Adding originals to combined · 9748f8e8
  Peter van 't Hof authored 9 years ago
  
  9748f8e8
- Adding exons and introns · 1f4aead0
  Peter van 't Hof authored 9 years ago
  
  1f4aead0
- Switch strand to Option[Boolean] · b895d10e
  Peter van 't Hof authored 9 years ago
  
  b895d10e
Aug 21, 2015
- Added message to exception · b4d1119d
  Peter van 't Hof authored 9 years ago
  
  b4d1119d
Aug 20, 2015
- Added squish method · b461b79a
  Peter van 't Hof authored 9 years ago
  
  b461b79a
- Switch to other bed reader · b530509c
  Peter van 't Hof authored 9 years ago
  
  b530509c
- Added a generic bed reader · ffe6ea8c
  Peter van 't Hof authored 9 years ago
  
  ffe6ea8c
- Remove val, no need for it · 908ac3bd
  Peter van 't Hof authored 9 years ago
  
  908ac3bd
- Added a bedRecord with a parser · 1c09d9c2
  Peter van 't Hof authored 9 years ago
  
  1c09d9c2
Aug 19, 2015
- Added option to only use the exons from a bed file · 5f0a3858
  Peter van 't Hof authored 9 years ago
  
  5f0a3858
- Added scatterPlot as argument · 386149a3
  Peter van 't Hof authored 9 years ago
  
  386149a3
- Added a scatter plot · 981e80ef
  Peter van 't Hof authored 9 years ago
  
  981e80ef
- Combining duplicates records · 90fe82b4
  Peter van 't Hof authored 9 years ago
  
  90fe82b4
- Fixed type · 28ea893d
  Peter van 't Hof authored 9 years ago
  
  28ea893d
- Added a scatter plot · 18a44662
  Peter van 't Hof authored 9 years ago
  
  18a44662
- Changed order of input · 00d79a41
  Peter van 't Hof authored 9 years ago
  
  00d79a41
- Changed default max threads · 4e7dee43
  Peter van 't Hof authored 9 years ago
  
  4e7dee43
- Added logging · 198fc86c
  Peter van 't Hof authored 9 years ago
  
  198fc86c
Aug 18, 2015
- Added basic version of tool · 8883f723
  Peter van 't Hof authored 9 years ago
  
  8883f723
- Template for new tool · def3530d
  Peter van 't Hof authored 9 years ago
  
  def3530d
Aug 17, 2015
- Merge branch 'fix-mapping_report' into 'develop' · 1890dd26
  Sander Bollen authored 9 years ago
  
  Skipping parts of report when they are skipped in the pipeline Report of mapping fail when skip_flexiprep or skip_metrics is enabled, this should fix it. See merge request !216
  1890dd26
- Fix inversion · 92ae5a49
  Peter van 't Hof authored 9 years ago
  
  92ae5a49
- Style fix · 5a765da5
  Peter van 't Hof authored 9 years ago
  
  5a765da5