Commit fb7b5d5d authored by Peter van 't Hof's avatar Peter van 't Hof

Added bamstats to executable

parent 74091f0f
......@@ -14,7 +14,6 @@
*/
package nl.lumc.sasc.biopet
import nl.lumc.sasc.biopet.tools.flagstat.BiopetFlagstat
import nl.lumc.sasc.biopet.utils.{ BiopetExecutable, MainCommand }
object BiopetToolsExecutable extends BiopetExecutable {
......@@ -23,10 +22,11 @@ object BiopetToolsExecutable extends BiopetExecutable {
def tools: List[MainCommand] = List(
nl.lumc.sasc.biopet.tools.AnnotateVcfWithBed,
nl.lumc.sasc.biopet.tools.bamstats.BamStats,
nl.lumc.sasc.biopet.tools.BaseCounter,
nl.lumc.sasc.biopet.tools.BastyGenerateFasta,
nl.lumc.sasc.biopet.tools.BedtoolsCoverageToCounts,
BiopetFlagstat,
nl.lumc.sasc.biopet.tools.flagstat.BiopetFlagstat,
nl.lumc.sasc.biopet.tools.CheckAllelesVcfInBam,
nl.lumc.sasc.biopet.tools.ExtractAlignedFastq,
nl.lumc.sasc.biopet.tools.FastqSplitter,
......
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