From fb7b5d5d0a2ecb76355a0e8929658d5b06e80bd8 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 21 Jul 2016 14:59:17 +0200
Subject: [PATCH] Added bamstats to executable

---
 .../scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala     | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/biopet-tools-package/src/main/scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala b/biopet-tools-package/src/main/scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala
index bfc2159cf..cf034c637 100644
--- a/biopet-tools-package/src/main/scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala
+++ b/biopet-tools-package/src/main/scala/nl/lumc/sasc/biopet/BiopetToolsExecutable.scala
@@ -14,7 +14,6 @@
  */
 package nl.lumc.sasc.biopet
 
-import nl.lumc.sasc.biopet.tools.flagstat.BiopetFlagstat
 import nl.lumc.sasc.biopet.utils.{ BiopetExecutable, MainCommand }
 
 object BiopetToolsExecutable extends BiopetExecutable {
@@ -23,10 +22,11 @@ object BiopetToolsExecutable extends BiopetExecutable {
 
   def tools: List[MainCommand] = List(
     nl.lumc.sasc.biopet.tools.AnnotateVcfWithBed,
+    nl.lumc.sasc.biopet.tools.bamstats.BamStats,
     nl.lumc.sasc.biopet.tools.BaseCounter,
     nl.lumc.sasc.biopet.tools.BastyGenerateFasta,
     nl.lumc.sasc.biopet.tools.BedtoolsCoverageToCounts,
-    BiopetFlagstat,
+    nl.lumc.sasc.biopet.tools.flagstat.BiopetFlagstat,
     nl.lumc.sasc.biopet.tools.CheckAllelesVcfInBam,
     nl.lumc.sasc.biopet.tools.ExtractAlignedFastq,
     nl.lumc.sasc.biopet.tools.FastqSplitter,
-- 
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