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biopet.biopet
Commits
f7937990
Commit
f7937990
authored
May 17, 2016
by
Peter van 't Hof
Browse files
style changes
parent
9cb010e9
Changes
2
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Awk.scala
View file @
f7937990
...
...
@@ -2,15 +2,15 @@ package nl.lumc.sasc.biopet.extensions
import
java.io.File
import
nl.lumc.sasc.biopet.core.
{
BiopetCommandLineFunction
,
Version
}
import
nl.lumc.sasc.biopet.core.
{
BiopetCommandLineFunction
,
Version
}
import
nl.lumc.sasc.biopet.utils.config.Configurable
import
org.broadinstitute.gatk.utils.commandline.
{
Input
,
Output
}
import
org.broadinstitute.gatk.utils.commandline.
{
Input
,
Output
}
import
scala.util.matching.Regex
/**
* Created by pjvan_thof on 17-5-16.
*/
* Created by pjvan_thof on 17-5-16.
*/
class
Awk
(
val
root
:
Configurable
)
extends
BiopetCommandLineFunction
with
Version
{
executable
=
config
(
"exe"
,
default
=
"awk"
,
freeVar
=
false
)
...
...
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala
View file @
f7937990
...
...
@@ -7,8 +7,8 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
import
org.broadinstitute.gatk.utils.commandline.
{
Input
,
Output
}
/**
* Created by pjvan_thof on 17-5-16.
*/
* Created by pjvan_thof on 17-5-16.
*/
class
GtfToGenePred
(
val
root
:
Configurable
)
extends
BiopetCommandLineFunction
{
executable
=
config
(
"exe"
,
default
=
"gtfToGenePred"
,
freeVar
=
false
)
...
...
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