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Commit f7937990 authored by Peter van 't Hof's avatar Peter van 't Hof
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Awk.scala
View file @ f7937990
......@@ -2,15 +2,15 @@ package nl.lumc.sasc.biopet.extensions
import java.io.File
import nl.lumc.sasc.biopet.core.{BiopetCommandLineFunction, Version}
import nl.lumc.sasc.biopet.core.{ BiopetCommandLineFunction, Version }
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{Input, Output}
import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
import scala.util.matching.Regex
/**
* Created by pjvan_thof on 17-5-16.
*/
* Created by pjvan_thof on 17-5-16.
*/
class Awk(val root: Configurable) extends BiopetCommandLineFunction with Version {
executable = config("exe", default = "awk", freeVar = false)
......
biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala
View file @ f7937990
......@@ -7,8 +7,8 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
/**
* Created by pjvan_thof on 17-5-16.
*/
* Created by pjvan_thof on 17-5-16.
*/
class GtfToGenePred(val root: Configurable) extends BiopetCommandLineFunction {
executable = config("exe", default = "gtfToGenePred", freeVar = false)
......
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