diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Awk.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Awk.scala index 594e6f56430bc37892cd7262adcbd04e341f28f9..5d325b432f725b5ca41852ac6ecfe701a6c5f79e 100644 --- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Awk.scala +++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Awk.scala @@ -2,15 +2,15 @@ package nl.lumc.sasc.biopet.extensions import java.io.File -import nl.lumc.sasc.biopet.core.{BiopetCommandLineFunction, Version} +import nl.lumc.sasc.biopet.core.{ BiopetCommandLineFunction, Version } import nl.lumc.sasc.biopet.utils.config.Configurable -import org.broadinstitute.gatk.utils.commandline.{Input, Output} +import org.broadinstitute.gatk.utils.commandline.{ Input, Output } import scala.util.matching.Regex /** - * Created by pjvan_thof on 17-5-16. - */ + * Created by pjvan_thof on 17-5-16. + */ class Awk(val root: Configurable) extends BiopetCommandLineFunction with Version { executable = config("exe", default = "awk", freeVar = false) diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala index 3593ef84b4da443ba5f50c2636c3044ba510c048..aa5b07742d744b2b2619d1f07d9df80b6a5d74c3 100644 --- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala +++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala @@ -7,8 +7,8 @@ import nl.lumc.sasc.biopet.utils.config.Configurable import org.broadinstitute.gatk.utils.commandline.{ Input, Output } /** - * Created by pjvan_thof on 17-5-16. - */ + * Created by pjvan_thof on 17-5-16. + */ class GtfToGenePred(val root: Configurable) extends BiopetCommandLineFunction { executable = config("exe", default = "gtfToGenePred", freeVar = false)