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Commit ef3b8eb6 authored by Peter van 't Hof's avatar Peter van 't Hof
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Added args

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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
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......@@ -181,6 +181,8 @@ trait ShivaTrait extends MultiSampleQScript with Reference {
aorrg.RGID = sampleId + "-" + libId
aorrg.RGLB = libId
aorrg.RGSM = sampleId
aorrg.RGPL = "unknown"
aorrg.RGPU = "na"
aorrg.isIntermediate = true
qscript.add(aorrg)
} else throw new IllegalStateException("Sample readgroup and/or library of input bamfile is not correct, file: " + bamFile +
......
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