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biopet.biopet
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e7541377148d6fca1b1847ebaaf78a6485da1e17
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Branches
12
biopet-bios
develop
epic-BIOPET-669
example-tarextract
fix-BIOPET-245
fix-BIOPET-593
fix-BIOPET-724
fix-BIOPET-728
fix-BIOPET-730
fix-BIOPET-782
gonl-GRCh38
master
default
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31 results
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Created with Raphaël 2.2.0
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Insertsize estimator
added fastq extension disclaimer to pipeline docs
reorder levels
Fix code warnings
Fixed createMetaExonCounts method
Combine overlapping genes in 1 thread
Merge branch 'feature-VarscanIntoShiva' into 'develop'
add SHARK config file location.
explain 4 level config values
Set more specific config for the pipeline. We want to keep the merged bam
Update some fields of the gentrap docs
Pindel update wrapper, specifing the output files (pindel generates more files)
Give mergeTables a extension
Added columnName to mergeTables
Code improvement
fixed strandProtocol
Some fixes with boolean in the pindelvcf wrapper
set defaults for mapping pipeline to skipmarkduplicates.
Merge remote-tracking branch 'remotes/origin/develop' into feature-measure_modules
Fixed single exon transcripts
Disabled countType by default
Fixed htseq-count
Implemented LazyCheck
Fixed config conversions
Fixed compile warning
Skipped flexiprep stats when flexiprep is not executed
Fixed bug in report
Merge remote-tracking branch 'remotes/origin/develop' into feature-VarscanIntoShiva
Change version command
Added tables and heatmaps to basecounter
Added tables and heatmaps to summary
Remove extra dot in filename
Adding sampleBamInsertSize (with some error, too be fixed later)
Remove old code
Implement baseCounter in pipeline
Optimize imports
Added tool extension
Added transcript counts
Add documentation
Added output files
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